YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|168240712, gi...
Organism:	Salmonella enterica subsp. enterica serovar Heidelberg str. SL486
Length:	531 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|168240712, gi....

Description	E-value	Query Range	Subject Range
gi\|48855897 - gi\|48855897\|ref\|ZP_00310055.1\| COG1123: ATPase components of various ABC-type transport systems, con... gi\|110636885, gi... - gi\|110636885\|ref\|YP_677092.1\| ABC transporter, ATP-binding protein [Cytophaga hutchinsonii ATCC 3340...	0.0	[1..531]	[13..583]
gi\|53763575, gi\|... - gi\|75908266\|ref\|YP_322562.1\| ABC transporter-like [Anabaena variabilis ATCC 29413], gi\|75701991\|gb\|A...	0.0	[1..531]	[5..604]
gi\|17133915, gi\|... - gi\|17232270\|ref\|NP_488818.1\| ABC transporter ATP-binding protein [Nostoc sp. PCC 7120], gi\|17133915\|... gi\|25384930 - pir\|\|AB2403 ABC transporter ATP-binding protein all4778 [imported] - Nostoc sp. (strain PCC 7120)	0.0	[1..531]	[5..604]
gi\|15158466, gi\|... - gi\|15890270\|ref\|NP_355942.1\| hypothetical protein AGR_L_318 [Agrobacterium tumefaciens str. C58], gi... gi\|25384809 - pir\|\|E98150 hypothetical ABC transporter ATP-binding protein in bcr 5'region [imported] - Agrobacter...	0.0	[1..531]	[45..588]
gi\|186686173, gi... - gi\|23126088\|ref\|ZP_00107995.1\| COG1123: ATPase components of various ABC-type transport systems, con...	0.0	[1..531]	[5..605]
gi\|39573949, gi\|... - gi\|42522753\|ref\|NP_968133.1\| ABC-type dipeptide transport system, ATPase component [Bdellovibrio bac...	0.0	[1..531]	[6..552]
gi\|48785352, gi\|... - gi\|91780211\|ref\|YP_555418.1\| peptide/opine/nickel ABC transporter ATPase [Burkholderia xenovorans LB...	0.0	[1..531]	[14..562]
gi\|115258954, gi... - gi\|116254306\|ref\|YP_770144.1\| putative ATP-binding component of ABC transporter [Rhizobium leguminos...	0.0	[1..531]	[12..555]

Back

Predicted Domain #1

Region A:
Residues: [1-531]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVSSNVTMQ FGSKPLFENI SVKFGGGNRY GLIGANGSGK STFMKILGGD LEPTLGNVSL  60
   61 DPNERIGKLR QDQFAFETFT VLDTVIMGHG ELWEVKQERD RIYALPEMSE EDGYKVADLE 120
  121 VKYGEMDGYS AEARAGELLL GVGIPLEQHY GLMSEVAPGW KLRVLLAQAL FSNPDILLLD 180
  181 EPTNNLDIDT IRWLEQVLNE RDSTMIIISH DRHFLNMVCT HMADLDYGDL RVYPGNYDEY 240
  241 MTAATQARER LLADNAKKKA QIAELQSFVS RFSANASKSR QATSRARQID KIKLEEVKAS 300
  301 SRQNPFIRFE QDKKLFRNAL EVEALTKGFD NGPLFKNVNL LLEVGEKLAV LGTNGVGKST 360
  361 LLKTLVGDLD ADHGTVKWSE NARIGYYAQD HEYEFENDLT VFEWMSQWKQ EGDDEQAVRS 420
  421 ILGRLLFSQD DIKKPAKVLS GGEKGRMLFG KLMMQKPNIL IMDEPTNHLD MESIESLNMA 480
  481 LELYQGTLIF VSHDREFVSS LATRVIEITP ERVVDFSGNY DDYLRSKGIE S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.30103
Match:	1yqtA
Description:	RNase-L Inhibitor
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits