YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213647158
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	349 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213647158.

Description	E-value	Query Range	Subject Range
CHEB_ERWCT - Chemotaxis response regulator protein-glutamate methylesterase OS=Erwinia carotovora subsp. atrosept... CHEB_PECAS - Chemotaxis response regulator protein-glutamate methylesterase OS=Pectobacterium atrosepticum (strai...	1.0E-65	[1..349]	[1..350]
CHEB_METFK - Chemotaxis response regulator protein-glutamate methylesterase OS=Methylobacillus flagellatus (strai...	3.0E-65	[1..349]	[1..355]
gi\|91204342 - gi\|91204342\|emb\|CAJ71995.1\| strongly similar to chemotaxis response regulator protein (glutamate met...	8.0E-65	[3..342]	[4..346]
CHEB_SALTI - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella typhi GN=cheB PE=3 SV=1 CHEB_SALTI - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella typhi GN=cheB PE=3 SV=1 gi\|16760866 - gi\|16760866\|ref\|NP_456483.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enterica...	1.0E-64	[1..349]	[1..349]
gi\|238788302, gi... - gi\|77975739\|ref\|ZP_00831273.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive...	1.0E-64	[1..349]	[1..349]
gi\|238713609, gi... - gi\|238785507\|ref\|ZP_04629490.1\| CheB [Yersinia bercovieri ATCC 43970], gi\|238713609\|gb\|EEQ05638.1\| C... gi\|77960283, gi\|... - gi\|77960283\|ref\|ZP_00824162.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive...	1.0E-64	[1..349]	[1..349]
gi\|238793987, gi... - gi\|77979949\|ref\|ZP_00835365.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive...	1.0E-64	[1..349]	[1..349]
CHEB_SALCH - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella choleraesuis GN=cheB PE... gi\|206708365, gi... - gi\|207856562\|ref\|YP_002243213.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. ente... CHEB_SALCH - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella choleraesuis GN=cheB PE... CHEB_SALCH - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella choleraesuis (strain SC... gi\|205352379, gi... - gi\|205352379\|ref\|YP_002226180.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. ente... gi\|194406852, gi... - gi\|194448548\|ref\|YP_002045971.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. ente... gi\|194401501, gi... - gi\|194442838\|ref\|YP_002041183.1\| chemotaxis response regulator protein-glutamate methylesterase CheB... gi\|204930964, gi... - gi\|204930964\|ref\|ZP_03221790.1\| chemotaxis response regulator protein-glutamate methylesterase CheB ... gi\|199602609, gi... - gi\|200390164\|ref\|ZP_03216775.1\| chemotaxis response regulator protein-glutamate methylesterase CheB ... gi\|161362887, gi... - gi\|161613523\|ref\|YP_001587488.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. ente... gi\|195634431, gi... - gi\|195634431\|gb\|EDX52783.1\| chemotaxis response regulator protein-glutamate methylesterase CheB [Sal... gi\|205339141, gi... - gi\|205339141\|gb\|EDZ25905.1\| chemotaxis response regulator protein-glutamate methylesterase CheB [Sal...	3.0E-64	[1..349]	[1..349]
CHEB_THIDA - Chemotaxis response regulator protein-glutamate methylesterase OS=Thiobacillus denitrificans (strain...	3.0E-64	[3..349]	[2..356]
gi\|93454601, gi\|... - gi\|94264945\|ref\|ZP_01288717.1\| Protein-glutamate methylesterase [delta proteobacterium MLMS-1], gi\|9...	6.0E-64	[1..344]	[1..344]

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Predicted Domain #1

Region A:
Residues: [1-349]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKIRVLSVD DSALMRQIMT EIINSHSDME MVATAPDPLV ARDLIKKFNP DVLTLDVEMP  60
   61 RMDGLDFLEK LMRLRPMPVV MVSSLTGKGS EVTLRALELG AIDFVTKPQL GIREGMLAYS 120
  121 EMIAEKVRTA ARARIAAHKP MAAPTTLKAG PLLSSEKLIA IGASTGGTEA IRHVLQPLPL 180
  181 SSPAVIITQH MPPGFTRSFA ERLNKLCQIS VKEAEDGERV LPGHAYIAPG DKHMELARSG 240
  241 ANYQIKIHDG PPVNRHRPSV DVLFHSVAKH AGRNAVGVIL TGMGNDGAAG MLAMYQAGAW 300
  301 TIAQNEASCV VFGMPREAIN MGGVSEVVDL SQVSQQMLAK ISAGQAIRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.045757
Match:	1a2oA
Description:	Methylesterase CheB, N-terminal domain; Methylesterase CheB, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits