YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165932235
Organism:	Positive selection vector pTCS
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165932235.

Description	E-value	Query Range	Subject Range
gi\|144396 - gi\|144396\|gb\|AAA23081.1\| immunity protein E6	149.0	[0..1]	[85..1]
IMM6_ECOLX - Colicin-E6 immunity protein OS=Escherichia coli GN=imm PE=3 SV=1 gi\|40545 - gi\|40545\|emb\|CAA33856.1\| unnamed protein product [Plasmid ColE6-CT14]	148.0	[0..1]	[85..1]
gi\|6176539 - gi\|6176539\|gb\|AAF05609.1\|AF190857_2 Cim [Klebsiella pneumoniae]	147.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLKLDLTWF DKSTEDFKGE EYSKDFGDDG SVMESLGVPF KDNVNNGCFD VIAEWVPLLQ  60
   61 PYFNHQIDIS DNEYFVSFDY RDGDW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.69897
Match:	1e44A
Description:	Colicin E3 immunity protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits