YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|48425900, gi\|...
Organism:	Homo sapiens
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48425900, gi|....

Description	E-value	Query Range	Subject Range
gi\|37528342, gi\|... - gi\|37528342\|ref\|NP_931687.1\| inducible ATP-independent RNA helicase [Photorhabdus luminescens subsp....	257.0	[0..4]	[205..13]
gi\|77958797 - gi\|77958797\|ref\|ZP_00822825.1\| COG0513: Superfamily II DNA and RNA helicases [Yersinia bercovieri AT...	254.0	[0..2]	[205..6]
gi\|77961875 - gi\|77961875\|ref\|ZP_00825704.1\| COG0513: Superfamily II DNA and RNA helicases [Yersinia mollaretii AT...	254.0	[0..2]	[205..6]
gi\|33332423 - gi\|33332423\|gb\|AAQ11420.1\| DeaD box RNA helicase [Yersinia enterocolitica]	254.0	[0..2]	[205..6]
gi\|51594838, gi\|... - gi\|51594838\|ref\|YP_069029.1\| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis IP 32953],... gi\|25511152 - pir\|\|AI0423 cold-shock dead-box protein A [imported] - Yersinia pestis (strain CO92) gi\|115349113, gi... - gi\|218930502\|ref\|YP_002348377.1\| ATP-dependent RNA helicase DeaD [Yersinia pestis CO92], gi\|16123634... gi\|108808981, gi... - gi\|108808981\|ref\|YP_652897.1\| ATP-dependent RNA helicase DeaD [Yersinia pestis Antiqua], gi\|10878089... gi\|166010049, gi... - gi\|166010049\|ref\|ZP_02230947.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|108774412, gi... - gi\|229900962\|ref\|ZP_04516086.1\| ATP-dependent RNA helicase [Yersinia pestis Nepal516], gi\|229682301\|... gi\|165922308, gi... - gi\|165925696\|ref\|ZP_02221528.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|167398750, gi... - gi\|167398750\|ref\|ZP_02304274.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|166204501, gi... - gi\|166214269\|ref\|ZP_02240304.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|167057246, gi... - gi\|167423076\|ref\|ZP_02314829.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|167420623, gi... - gi\|167420623\|ref\|ZP_02312376.1\| ATP-dependent RNA helicase, DEAD/DEAH box family [Yersinia pestis bi... gi\|229839140, gi... - gi\|229839140\|ref\|ZP_04459299.1\| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. P... gi\|89105037, gi\|... - gi\|89105037\|ref\|ZP_01177564.1\| COG0513: Superfamily II DNA and RNA helicases [Yersinia pestis biovar... gi\|186893847, gi... - gi\|186893847\|ref\|YP_001870959.1\| ATP-dependent RNA helicase DeaD [Yersinia pseudotuberculosis PB1/+]... gi\|229896629, gi... - gi\|229896629\|ref\|ZP_04511796.1\| ATP-dependent RNA helicase [Yersinia pestis Pestoides A], gi\|2297004... gi\|229899704, gi... - gi\|229899704\|ref\|ZP_04514845.1\| ATP-dependent RNA helicase [Yersinia pestis biovar Orientalis str. I... gi\|77634866, gi\|... - gi\|77634866\|ref\|ZP_00796958.1\| COG0513: Superfamily II DNA and RNA helicases [Yersinia pestis Angola... gi\|152959087, gi... - gi\|77631483\|ref\|ZP_00794069.1\| COG0513: Superfamily II DNA and RNA helicases [Yersinia pseudotubercu... gi\|149289109, gi... - gi\|153997472\|ref\|ZP_02022572.1\| cold-shock dead-box protein A [Yersinia pestis CA88-4125], gi\|149289... gi\|145600551, gi... - gi\|145600551\|ref\|YP_001164627.1\| ATP-dependent RNA helicase DeaD [Yersinia pestis Pestoides F], gi\|1... gi\|161511438 - gi\|161511438\|ref\|NP_991988.2\| ATP-dependent RNA helicase DeaD [Yersinia pestis biovar Microtus str. ... gi\|161484874 - gi\|161484874\|ref\|NP_668033.2\| ATP-dependent RNA helicase DeaD [Yersinia pestis KIM] Q66F54\|Q66F54_YERPS - Cold-shock dead-box protein A - Yersinia pseudotuberculosis	254.0	[0..2]	[205..6]
gi\|49610191, gi\|... - gi\|50119665\|ref\|YP_048832.1\| ATP-dependent RNA helicase DeaD [Pectobacterium atrosepticum SCRI1043],...	254.0	[0..3]	[205..6]
gi\|21957415, gi\|... - gi\|22124610\|ref\|NP_668033.1\| inducible ATP-independent RNA helicase [Yersinia pestis KIM], gi\|219574... gi\|45435306, gi\|... - gi\|45440449\|ref\|NP_991988.1\| inducible ATP-independent RNA helicase [Yersinia pestis biovar Microtus...	254.0	[0..2]	[205..11]
gi\|238793027, gi... - gi\|77978617\|ref\|ZP_00834044.1\| COG0513: Superfamily II DNA and RNA helicases [Yersinia intermedia AT...	253.0	[0..2]	[205..6]
gi\|625758, gi\|149184 - pir\|\|JX0314 DEAD box protein - Klebsiella pneumoniae, gi\|149184\|gb\|AAA61345.1\| RNA helicase	253.0	[0..2]	[205..21]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGNEFEDYCL KRELLMGIFE MGWEKPSPIQ EESIPIALSG RDILARAKNG TGKSGAYLIP  60
   61 LLERLDLKKD NIQAMVIVPT RELALQVSQI CIQVSKHMGG AKVMATTGGT NLRDDIMRLD 120
  121 DTVHVVIATP GRILDLIKKG VAKVDHVQMI VLDEADKLLS QDFVQIMEDI ILTLPKNRQI 180
  181 LLYSATFPLS VQKFMNSHLE KPYEIN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	1vecA
Description:	Crystal structure of the N-terminal domain of rck/p54, a human DEAD-box protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: