YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190407701
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	608 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190407701.

Description	E-value	Query Range	Subject Range
gi\|207340779 - gi\|207340779\|gb\|EDZ69022.1\| YPL265Wp-like protein [Saccharomyces cerevisiae AWRI1631] DIP5 - Dicarboxylic amino acid permease, mediates high-affinity and high-capacity transport of L-glutamate ... gi\|190407701 - gi\|190407701\|gb\|EDV10966.1\| dicarboxylic amino acid permease [Saccharomyces cerevisiae RM11-1a] DIP5_YEAST - Dicarboxylic amino acid permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DIP5 PE...	0.0	[1..608]	[1..608]
gi\|28564978 - gi\|28564978\|gb\|AAO32573.1\| DIP5 [Saccharomyces kluyveri]	0.0	[49..608]	[17..581]
gi\|49643818, gi\|... - gi\|49643818\|emb\|CAG99770.1\| KLLA0E16281p [Kluyveromyces lactis], gi\|28565044\|gb\|AAO32605.1\| DIP5 [Kl... gi\|50309351, gi\|... - gi\|50309351\|ref\|XP_454683.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643818\|emb\|CAG9977...	0.0	[14..607]	[8..604]
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	0.0	[10..598]	[34..628]
gi\|447739 - gi\|447739\|prf\|\|1915304A nylB upstream ORF	0.0	[3..606]	[1..608]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	0.0	[5..600]	[64..656]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMPLKKMFT STSPRNSSSL DSDHDAYYSK QNPDNFPVKE QEIYNIDLEE NNVSSRSSTS  60
   61 TSPSARDDSF AVPDGKDENT R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [82-608]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRKDLKARHI SMIAIGGSLG TGLLIGTGTA LLTGGPVAML IAYAFVGLLV FYTMACLGEM  60
   61 ASYIPLDGFT SYASRYVDPA LGFAIGYTYL FKYFILPPNQ LTAAALVIQY WISRDRVNPG 120
  121 VWITIFLVVI VAINVVGVKF FGEFEFWLSS FKVMVMLGLI LLLFIIMLGG GPNHDRLGFR 180
  181 YWRDPGAFKE YSTAITGGKG KFVSFVAVFV YSLFSYTGIE LTGIVCSEAE NPRKSVPKAI 240
  241 KLTVYRIIVF YLCTVFLLGM CVAYNDPRLL STKGKSMSAA ASPFVVAIQN SGIEVLPHIF 300
  301 NACVLVFVFS ACNSDLYVSS RNLYALAIDG KAPKIFAKTS RWGVPYNALI LSVLFCGLAY 360
  361 MNVSSGSAKI FNYFVNVVSM FGILSWITIL IVYIYFDKAC RAQGIDKSKF AYVAPGQRYG 420
  421 AYFALFFCIL IALIKNFTVF LGHKFDYKTF ITGYIGLPVY IISWAGYKLI YKTKVIKSTD 480
  481 VDLYTFKEIY DREEEEGRMK DQEKEERLKS NGKNMEWFYE KFLGNIF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	176.522879
Match:	PF00324
Description:	Amino acid permease

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits