YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|199602823, gi...
Organism:	Salmonella enterica subsp. enterica serovar Virchow str. SL491
Length:	561 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|199602823, gi....

Description	E-value	Query Range	Subject Range
LCFA_ECOLI - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (Long-chain acyl-CoA synthetase) (Acyl-CoA synthetase... gi\|215265088, gi... - gi\|215487016\|ref\|YP_002329447.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O127:H6 str. E2... gi\|209912429, gi... - gi\|209919170\|ref\|YP_002293254.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli SE11], gi\|20991... gi\|194411949, gi... - gi\|194430022\|ref\|ZP_03062529.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli B171], gi\|194411... gi\|193071282, gi... - gi\|193071282\|ref\|ZP_03052201.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli E110019], gi\|192... gi\|218352099, gi... - gi\|218695367\|ref\|YP_002403034.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli 55989], gi\|2183... gi\|218427305, gi... - gi\|218689741\|ref\|YP_002397953.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli ED1a], gi\|21842... gi\|218365436, gi... - gi\|218558667\|ref\|YP_002391580.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli S88], gi\|218365... gi\|218361145, gi... - gi\|218554377\|ref\|YP_002387290.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli IAI1], gi\|21836... gi\|188495135, gi... - gi\|188495135\|ref\|ZP_03002405.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli 53638], gi\|18849... gi\|170680693, gi... - gi\|170680693\|ref\|YP_001743441.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli SMS-3-5], gi\|17... gi\|169889296, gi... - gi\|170081461\|ref\|YP_001730781.1\| acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) [Escherichi... EG11530 - acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) / Acyl-CoA synthase LCFA_ECOL6 - Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... gi\|82776971, gi\|... - gi\|82776971\|ref\|YP_403320.1\| long-chain-fatty-acid--CoA ligase [Shigella dysenteriae Sd197], gi\|8124... gi\|218432400, gi... - gi\|218705303\|ref\|YP_002412822.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli UMN026], gi\|218... gi\|218699627, gi... - gi\|218699627\|ref\|YP_002407256.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli IAI39], gi\|2183... gi\|242377526, gi... - gi\|251785253\|ref\|YP_002999557.1\| hypothetical protein B21_01763 [Escherichia coli BL21], gi\|24237752... gi\|238901019, gi... - gi\|238901019\|ref\|YP_002926815.1\| acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) [Escherichi... gi\|89108644, gi\|... - gi\|89108644\|ref\|AP_002424.1\| acyl-CoA synthetase [Escherichia coli str. K-12 substr. W3110], gi\|1736... gi\|253977959, gi... - gi\|254288652\|ref\|YP_003054400.1\| acyl-CoA synthase [Escherichia coli BL21(DE3)], gi\|253977959\|gb\|ACT... gi\|253973765, gi... - gi\|254161864\|ref\|YP_003044972.1\| acyl-CoA synthase [Escherichia coli B str. REL606], gi\|253973765\|gb... gi\|157066949, gi... - gi\|157161269\|ref\|YP_001458587.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli HS], gi\|1570669... gi\|157078816, gi... - gi\|157156786\|ref\|YP_001463105.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli E24377A], gi\|15... LCFA_ECOL6 - Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O6 GN=fadD PE=3 SV=1 EG11530 - acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase) / Acyl-CoA synthase	0.0	[1..561]	[1..561]
gi\|15831768, gi\|... - gi\|15831768\|ref\|NP_310541.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. Sakai]... gi\|188024849, gi... - gi\|188024849\|ref\|ZP_02774387.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|187776032, gi... - gi\|187776032\|ref\|ZP_02799887.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... LCFA_ECO57 - Long-chain-fatty-acid--CoA ligase OS=Escherichia coli O157:H7 GN=fadD PE=3 SV=1 gi\|254793427, gi... - gi\|254793427\|ref\|YP_003078264.1\| acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase [Escherichia... gi\|15802218, gi\|... - gi\|15802218\|ref\|NP_288241.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 EDL933], gi... gi\|25293428, gi\|... - pir\|\|F85791 long-chain-fatty-acid-CoA ligase [imported] - Escherichia coli (strain O157:H7, substrai... gi\|189406059, gi... - gi\|189406059\|ref\|ZP_02826039.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC5... gi\|189405101, gi... - gi\|189405101\|ref\|ZP_02813224.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC8... gi\|189360342, gi... - gi\|189403489\|ref\|ZP_02795784.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|189402537, gi... - gi\|189402537\|ref\|ZP_02783121.2\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|209397101, gi... - gi\|209397101\|ref\|YP_002270882.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC... gi\|208821900, gi... - gi\|208821900\|ref\|ZP_03262220.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|208731034, gi... - gi\|208816691\|ref\|ZP_03257811.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4... gi\|208810251, gi... - gi\|208810251\|ref\|ZP_03252127.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli O157:H7 str. EC4...	0.0	[1..561]	[1..561]
gi\|81245203, gi\|... - gi\|82543792\|ref\|YP_407739.1\| long-chain-fatty-acid--CoA ligase [Shigella boydii Sb227], gi\|81245203\|...	0.0	[1..561]	[1..561]
gi\|26248063, gi\|... - gi\|26248063\|ref\|NP_754103.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli CFT073], gi\|2610846...	0.0	[1..561]	[23..583]
gi\|91072594, gi\|... - gi\|91211020\|ref\|YP_541006.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli UTI89], gi\|91072594... gi\|115513089, gi... - gi\|117623965\|ref\|YP_852878.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli APEC O1], gi\|11551...	0.0	[1..561]	[23..583]
gi\|110641922, gi... - gi\|110641922\|ref\|YP_669652.1\| long-chain-fatty-acid--CoA ligase [Escherichia coli 536], gi\|110343514... gi\|75513698 - gi\|75513698\|ref\|ZP_00736074.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75255568 - gi\|75255568\|ref\|ZP_00727355.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75241326 - gi\|75241326\|ref\|ZP_00725177.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75227933 - gi\|75227933\|ref\|ZP_00714633.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75215166 - gi\|75215166\|ref\|ZP_00713611.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|75208737 - gi\|75208737\|ref\|ZP_00709029.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|124531917, gi... - gi\|124531917\|ref\|ZP_01702000.1\| AMP-dependent synthetase and ligase [Escherichia coli B], gi\|1244982... gi\|75195871 - gi\|75195871\|ref\|ZP_00705941.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... tr\|A0A109ZPL0\|A0... - Long-chain fatty acid--CoA ligase OS=Escherichia coli (strain K12) GN=C3026_10285 PE=4 SV=1 gi\|75190835 - gi\|75190835\|ref\|ZP_00704102.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch... gi\|83584990 - gi\|83584990\|ref\|ZP_00923645.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Esch...	0.0	[1..561]	[12..572]
gi\|197093666, gi... - gi\|197362189\|ref\|YP_002141826.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enter... gi\|56127520, gi\|... - gi\|56413263\|ref\|YP_150338.1\| long-chain-fatty-acid--CoA ligase [Salmonella enterica subsp. enterica ...	0.0	[1..561]	[1..561]
gi\|75177266 - gi\|75177266\|ref\|ZP_00697355.1\| COG0318: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Shig...	0.0	[1..561]	[12..572]
gi\|24112807, gi\|... - gi\|24112807\|ref\|NP_707317.1\| long-chain-fatty-acid--CoA ligase [Shigella flexneri 2a str. 301], gi\|2... gi\|30062941, gi\|... - gi\|30062941\|ref\|NP_837112.1\| long-chain-fatty-acid--CoA ligase [Shigella flexneri 2a str. 2457T], gi...	0.0	[1..561]	[23..583]
gi\|110614950, gi... - gi\|110805402\|ref\|YP_688922.1\| long-chain-fatty-acid--CoA ligase [Shigella flexneri 5 str. 8401], gi\|...	0.0	[1..561]	[12..572]

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Predicted Domain #1

Region A:
Residues: [1-561]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVWLNRYP ADVPAEINPD RYQSLVELFE HAATRYADQP AFVNMGEVMT FRKLEERSRA  60
   61 FAAYLQQGLG LKKGDRVALM MPNLLQYPVA LFGILRAGMI VVNVNPLYTP RELEHQLNDS 120
  121 GAAAIIIVSN FAHTLEKVVE KTSVQHVILT RMGDQLSTAK GTVVNFVVKY IKRLVPKYHL 180
  181 PDAISFRSAL QHGYRMQYVK PEVVAEDLAF LQYTGGTTGV AKGAMLTHRN MLANLEQVKA 240
  241 TYGPLLHPGK ELVVTALPLY HIFALTMNCL LFIELGGQNL LITNPRDIPG LVKELAKYPF 300
  301 TAMTGVNTLF NALLNNKEFQ QLDFSSLHLS AGGGMPVQNV VAERWVKLTG QYLLEGYGLT 360
  361 ECAPLVSVNP HDIDYHSGSI GLPVPSTEAK LVDDDDNEVA PGEAGELCVK GPQVMLGYWQ 420
  421 RPDATDEIIK DGWLHTGDIA VMDEDGFLRI VDRKKDMILV SGFNVYPNEI EDVVMQHSGV 480
  481 QEVAAVGVPS GSSGEAVKLF VVKKDPALTD DALITFCRRH LTGYKVPKQV EFREELPKSN 540
  541 VGKILRRELR DEARGKVDNK A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	128.0
Match:	2p2bA
Description:	No description for 2p2bA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits