YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213857516
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213857516.

Description	E-value	Query Range	Subject Range
gi\|200387904, gi... - gi\|200387904\|ref\|ZP_03214516.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Vir... lcl\|NC_016856.1_... - [gene=yhfA] [protein=hypothetical protein] [protein_id=YP_005239657.1] [location=complement(3628792.... gi\|205274690, gi... - gi\|205354909\|ref\|YP_002228710.1\| hypothetical protein SG3974 [Salmonella enterica subsp. enterica se... gi\|197095790, gi... - gi\|197364313\|ref\|YP_002143950.1\| hypothetical protein SSPA3109 [Salmonella enterica subsp. enterica ... gi\|198242114, gi... - gi\|198242114\|ref\|YP_002217426.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Du... gi\|194450894, gi... - gi\|194450894\|ref\|YP_002047488.1\| hypothetical protein SeHA_C3770 [Salmonella enterica subsp. enteric... gi\|197263035, gi... - gi\|197263035\|ref\|ZP_03163109.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Sai... gi\|56129640, gi\|... - gi\|56415383\|ref\|YP_152458.1\| hypothetical protein SPA3331 [Salmonella enterica subsp. enterica serov... gi\|167994565, gi... - gi\|205327576\|gb\|EDZ14340.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar 4,[5],1... gi\|62181969, gi\|... - gi\|62181969\|ref\|YP_218386.1\| hypothetical protein SC3399 [Salmonella enterica subsp. enterica serova... gi\|168260820, gi... - gi\|205350281\|gb\|EDZ36912.1\| OsmC family protein [Salmonella enterica subsp. enterica serovar Hadar s... gi\|238913588 - gi\|238913588\|ref\|ZP_04657425.1\| hypothetical protein SentesTe_20998 [Salmonella enterica subsp. ente... gi\|16422022, gi\|... - gi\|16766753\|ref\|NP_462368.1\| hypothetical protein STM3465 [Salmonella typhimurium LT2], gi\|16422022\|... gi\|206710509, gi... - gi\|207858706\|ref\|YP_002245357.1\| hypothetical protein SEN3292 [Salmonella enterica subsp. enterica s... gi\|224585259, gi... - gi\|224585259\|ref\|YP_002639058.1\| hypothetical protein SPC_3534 [Salmonella enterica subsp. enterica ...	4.0E-34	[1..134]	[1..134]
gi\|71735354, gi\|... - gi\|71735354\|ref\|YP_272975.1\| OsmC/Ohr family protein [Pseudomonas syringae pv. phaseolicola 1448A], ...	2.0E-33	[1..133]	[63..200]
gi\|188014196, gi... - gi\|188014196\|gb\|EDU52318.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4113], gi\|168751824... gi\|168759385, gi... - gi\|189369731\|gb\|EDU88147.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4501], gi\|168759385... gi\|189358795, gi... - gi\|189358795\|gb\|EDU77214.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4401], gi\|168753113... gi\|168772747, gi... - gi\|187771521\|gb\|EDU35365.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4196], gi\|168772747... gi\|189364703, gi... - gi\|189364703\|gb\|EDU83122.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4486], gi\|168765708... gi\|168785165, gi... - gi\|189374572\|gb\|EDU92988.1\| OsmC family protein [Escherichia coli O157:H7 str. EC869], gi\|168785165\|... gi\|189002418, gi... - gi\|189002418\|gb\|EDU71404.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4076], gi\|168779444... gi\|110807190, gi... - gi\|110807190\|ref\|YP_690710.1\| hypothetical protein SFV_3362 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|91074407, gi\|... - gi\|91212833\|ref\|YP_542819.1\| hypothetical protein UTI89_C3859 [Escherichia coli UTI89], gi\|91074407\|... gi\|13363680, gi\|... - gi\|15833461\|ref\|NP_312234.1\| hypothetical protein ECs4207 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110643596, gi... - gi\|110643596\|ref\|YP_671326.1\| hypothetical protein ECP_3447 [Escherichia coli 536], gi\|110345188\|gb\|... gi\|75236957, gi\|... - gi\|75236957\|ref\|ZP_00721013.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|209396265, gi... - gi\|209396265\|ref\|YP_002272798.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|191171480, gi... - gi\|75241547\|ref\|ZP_00725392.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|208739801, gi... - gi\|208819678\|ref\|ZP_03259998.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|157080938, gi... - gi\|75188132\|ref\|ZP_00701399.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|215266715, gi... - gi\|215488643\|ref\|YP_002331074.1\| hypothetical protein E2348C_3606 [Escherichia coli O127:H6 str. E23... gi\|191168406, gi... - gi\|75228398\|ref\|ZP_00715044.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|209920809, gi... - gi\|209920809\|ref\|YP_002294893.1\| hypothetical protein ECSE_3618 [Escherichia coli SE11], gi\|20991406... gi\|81242785, gi\|... - gi\|82778637\|ref\|YP_404986.1\| hypothetical protein SDY_3518 [Shigella dysenteriae Sd197], gi\|81242785... gi\|218550619, gi... - gi\|218550619\|ref\|YP_002384410.1\| hypothetical protein EFER_3329 [Escherichia fergusonii ATCC 35469],... gi\|89110653, gi\|... - gi\|89110653\|ref\|AP_004433.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|217321028, gi... - gi\|217324807\|ref\|ZP_03440891.1\| OsmC family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|188492188, gi... - gi\|75516174\|ref\|ZP_00738292.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|218560418, gi... - gi\|218560418\|ref\|YP_002393331.1\| hypothetical protein ECS88_3746 [Escherichia coli S88], gi\|21836718... gi\|73857340, gi\|... - gi\|74313863\|ref\|YP_312282.1\| hypothetical protein SSON_3487 [Shigella sonnei Ss046], gi\|73857340\|gb\|... gi\|218555901, gi... - gi\|218555901\|ref\|YP_002388814.1\| hypothetical protein ECIAI1_3494 [Escherichia coli IAI1], gi\|218362... gi\|170018407, gi... - gi\|170018407\|ref\|YP_001723361.1\| hypothetical protein EcolC_0356 [Escherichia coli ATCC 8739], gi\|16... gi\|168797132, gi... - gi\|189380119\|gb\|EDU98535.1\| OsmC family protein [Escherichia coli O157:H7 str. EC508], gi\|168797132\|... gi\|170682548, gi... - gi\|170682548\|ref\|YP_001745605.1\| OsmC family protein [Escherichia coli SMS-3-5], gi\|170520266\|gb\|ACB... gi\|169890709, gi... - gi\|170082874\|ref\|YP_001732194.1\| hypothetical protein ECDH10B_3532 [Escherichia coli str. K-12 subst... gi\|194439478, gi... - gi\|83585132\|ref\|ZP_00923784.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|195934853 - gi\|195934853\|ref\|ZP_03080235.1\| hypothetical protein EscherichcoliO157_00075 [Escherichia coli O157:... gi\|75180030, gi\|... - gi\|75180030\|ref\|ZP_00700017.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|194434657, gi... - gi\|194434657\|ref\|ZP_03066912.1\| OsmC family protein [Shigella dysenteriae 1012], gi\|194417116\|gb\|EDX... gi\|208812549, gi... - gi\|208812549\|ref\|ZP_03253878.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208808858, gi... - gi\|208808858\|ref\|ZP_03251195.1\| OsmC family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... YHFA_ECOLI - Protein yhfA - Escherichia coli gi\|24053820, gi\|... - gi\|24114621\|ref\|NP_709131.1\| hypothetical protein SF3375 [Shigella flexneri 2a str. 301], gi\|2405382... YHFA_SHIFL - Protein YhfA OS=Shigella flexneri GN=yhfA PE=4 SV=1 gi\|30043620, gi\|... - gi\|30065358\|ref\|NP_839529.1\| hypothetical protein S4388 [Shigella flexneri 2a str. 2457T], gi\|300436... YHFA_ECOL6 - Protein YhfA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yhfA PE=4 SV=1 EG11182 - OsmC family protein / OsmC family protein, function unknown YHFA_ECO57 - Protein YhfA OS=Escherichia coli O157:H7 GN=yhfA PE=4 SV=1 gi\|15803870, gi\|... - gi\|15803870\|ref\|NP_289904.1\| hypothetical protein Z4717 [Escherichia coli O157:H7 EDL933], gi\|125179... gi\|237703088, gi... - gi\|237703088\|ref\|ZP_04533569.1\| OsmC family protein [Escherichia sp. 3_2_53FAA], gi\|226902352\|gb\|EEH... gi\|238860389, gi... - gi\|238902448\|ref\|YP_002928244.1\| hypothetical protein BWG_3048 [Escherichia coli BW2952], gi\|2388603... gi\|242378883, gi... - gi\|251786610\|ref\|YP_003000914.1\| hypothetical protein B21_03159 [Escherichia coli BL21], gi\|24237888... YHFA_ECOL6 - Protein yhfA OS=Escherichia coli O6 GN=yhfA PE=4 SV=1 gi\|253979341, gi... - gi\|254290034\|ref\|YP_003055782.1\| hypothetical protein ECD_03207 [Escherichia coli BL21(DE3)], gi\|253... gi\|254038519, gi... - gi\|254038519\|ref\|ZP_04872575.1\| yhfA [Escherichia sp. 1_1_43], gi\|226839025\|gb\|EEH71048.1\| yhfA [Esc... gi\|253975185, gi... - gi\|254163284\|ref\|YP_003046392.1\| hypothetical protein ECB_03207 [Escherichia coli B str. REL606], gi... gi\|254594680, gi... - gi\|254795280\|ref\|YP_003080117.1\| hypothetical protein ECSP_4314 [Escherichia coli O157:H7 str. TW143... gi\|115514756, gi... - gi\|117625632\|ref\|YP_858955.1\| hypothetical protein APECO1_3099 [Escherichia coli APEC O1], gi\|115514... gi\|124528132, gi... - gi\|124528132\|ref\|ZP_01699465.1\| OsmC family protein [Escherichia coli B], gi\|124500787\|gb\|EAY48256.1... EG11182 - OsmC family protein / OsmC family protein, function unknown gi\|218353768, gi... - gi\|218697036\|ref\|YP_002404703.1\| hypothetical protein EC55989_3761 [Escherichia coli 55989], gi\|2183... gi\|218429201, gi... - gi\|218691637\|ref\|YP_002399849.1\| hypothetical protein ECED1_4019 [Escherichia coli ED1a], gi\|2184292... gi\|218706951, gi... - gi\|218706951\|ref\|YP_002414470.1\| hypothetical protein ECUMN_3818 [Escherichia coli UMN026], gi\|21843... gi\|218372090, gi... - gi\|218702104\|ref\|YP_002409733.1\| hypothetical protein ECIAI39_3839 [Escherichia coli IAI39], gi\|2183... gi\|227883491, gi... - gi\|227883491\|ref\|ZP_04001296.1\| OsmC family protein [Escherichia coli 83972], gi\|227839370\|gb\|EEJ498...	4.0E-33	[1..134]	[1..134]
gi\|157162833, gi... - gi\|75197289\|ref\|ZP_00707359.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	4.0E-33	[1..134]	[1..134]
gi\|77958267, gi\|... - gi\|77958267\|ref\|ZP_00822303.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|238797263, gi... - gi\|77962711\|ref\|ZP_00826528.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	7.0E-33	[1..133]	[1..133]
gi\|238788936, gi... - gi\|77975017\|ref\|ZP_00830554.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	7.0E-33	[1..133]	[1..133]
gi\|193061888, gi... - gi\|75260353\|ref\|ZP_00731621.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|75211724, gi\|... - gi\|75211724\|ref\|ZP_00711788.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati...	1.0E-32	[1..134]	[1..134]
gi\|84780798, gi\|... - gi\|85060278\|ref\|YP_455980.1\| hypothetical protein SG2300 [Sodalis glossinidius str. 'morsitans'], gi...	1.0E-32	[1..131]	[1..131]
gi\|25306897 - pir\|\|AD0022 conserved hypothetical protein YPO0176 [imported] - Yersinia pestis (strain CO92) gi\|45440036, gi\|... - gi\|45440036\|ref\|NP_991575.1\| hypothetical protein YP_0175 [Yersinia pestis biovar Microtus str. 9100... gi\|149290181, gi... - gi\|150260773\|ref\|ZP_01917501.1\| hypothetical protein YPE_3091 [Yersinia pestis CA88-4125], gi\|149290... gi\|21960960, gi\|... - gi\|22127827\|ref\|NP_671250.1\| hypothetical protein y3957 [Yersinia pestis KIM], gi\|21960960\|gb\|AAM875... gi\|15978279, gi\|... - gi\|218927385\|ref\|YP_002345260.1\| hypothetical protein YPO0176 [Yersinia pestis CO92], gi\|16120517\|re... gi\|51598018, gi\|... - gi\|51598018\|ref\|YP_072209.1\| hypothetical protein YPTB3728 [Yersinia pseudotuberculosis IP 32953], g... gi\|167051197, gi... - gi\|167398693\|ref\|ZP_02304217.1\| OsmC family protein [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|166213228, gi... - gi\|166213228\|ref\|ZP_02239263.1\| OsmC family protein [Yersinia pestis biovar Antiqua str. B42003004],... gi\|167425715, gi... - gi\|167425715\|ref\|ZP_02317468.1\| OsmC family protein [Yersinia pestis biovar Mediaevalis str. K197300... gi\|167418830, gi... - gi\|167418830\|ref\|ZP_02310583.1\| OsmC family protein [Yersinia pestis biovar Orientalis str. MG05-102... gi\|108809287, gi... - gi\|108809287\|ref\|YP_653203.1\| hypothetical protein YPA_3296 [Yersinia pestis Antiqua], gi\|108781200\|... gi\|169749044, gi... - gi\|170022510\|ref\|YP_001719015.1\| hypothetical protein YPK_0249 [Yersinia pseudotuberculosis YPIII], ... gi\|165939997, gi... - gi\|89102999\|ref\|ZP_01175597.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|167468842 - gi\|167468842\|ref\|ZP_02333546.1\| hypothetical protein YpesF_13309 [Yersinia pestis FV-1] gi\|229904585, gi... - gi\|229904585\|ref\|ZP_04519696.1\| conserved protein [Yersinia pestis Nepal516], gi\|229678703\|gb\|EEO748... gi\|229836343, gi... - gi\|229836343\|ref\|ZP_04456510.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229706411\|gb\|EEO... gi\|229696399, gi... - gi\|229840033\|ref\|ZP_04460192.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229842115, gi... - gi\|229842115\|ref\|ZP_04462270.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|165990675, gi... - gi\|166010585\|ref\|ZP_02231483.1\| OsmC family protein [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|165927883, gi... - gi\|165927883\|ref\|ZP_02223715.1\| OsmC family protein [Yersinia pestis biovar Orientalis str. F1991016... Q664P1\|Q664P1_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis	2.0E-32	[1..133]	[1..133]
gi\|152961142, gi... - gi\|77631154\|ref\|ZP_00793740.1\| COG1765: Predicted redox protein, regulator of disulfide bond formati... gi\|186897214, gi... - gi\|186897214\|ref\|YP_001874326.1\| hypothetical protein YPTS_3920 [Yersinia pseudotuberculosis PB1/+],...	2.0E-32	[1..133]	[1..133]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQARVKWVEG LTFLGESSSG HQILMDGNSG DKAPSPMEMV LMAAGGCSAI DVVSILQKGR  60
   61 QNVTNCEVKL TSERREDAPR LFTHINLHFI VTGGDLKEAA VARAVDLSAE KYCSVALMLE 120
  121 KAVNITHSYE VIAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1ml8A
Description:	Hypothetical protein in CRP region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.0998435033416311	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: