YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6435763, gi\|6...
Organism:	Homo sapiens
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6435763, gi|6....

Description	E-value	Query Range	Subject Range
gi\|120325072, gi... - gi\|77954892\|ref\|ZP_00819276.1\| Signal recognition particle protein [Marinobacter aquaeolei VT8], gi\|...	145.0	[0..2]	[108..358]
gi\|68547556, gi\|... - gi\|68547556\|ref\|ZP_00587090.1\| Signal recognition particle protein [Shewanella amazonensis SB2B], gi...	145.0	[0..2]	[109..329]
gi\|39982512, gi\|... - gi\|39995748\|ref\|NP_951699.1\| signal recognition particle protein [Geobacter sulfurreducens PCA], gi\|...	145.0	[0..1]	[109..327]
gi\|78195323, gi\|... - gi\|78224068\|ref\|YP_385815.1\| signal recognition particle subunit FFH/SRP54 (srp54) [Geobacter metall...	144.0	[0..1]	[109..327]
gi\|78042676, gi\|... - gi\|78042676\|ref\|YP_360266.1\| signal recognition particle protein [Carboxydothermus hydrogenoformans ...	144.0	[0..1]	[108..326]
gi\|27375592, gi\|... - gi\|27375592\|ref\|NP_767121.1\| signal recognition particle protein [Bradyrhizobium japonicum USDA 110]...	144.0	[0..1]	[109..442]
gi\|26988194, gi\|... - gi\|26988194\|ref\|NP_743619.1\| signal recognition particle protein [Pseudomonas putida KT2440], gi\|249...	144.0	[0..2]	[108..409]
gi\|77976453, gi\|... - gi\|77976453\|ref\|ZP_00831941.1\| COG0541: Signal recognition particle GTPase [Yersinia intermedia ATCC...	144.0	[0..2]	[109..329]
gi\|114652596 - gi\|114652596\|ref\|XP_001135953.1\| PREDICTED: hypothetical protein isoform 4 [Pan troglodytes]	144.0	[0..1]	[109..326]
gi\|114048412, gi... - gi\|114048412\|ref\|YP_738962.1\| signal recognition particle protein [Shewanella sp. MR-7], gi\|11388985...	144.0	[0..2]	[109..329]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QFTLRDMYEQ FQNIMKMGPF SQILGMIPGF GTDFMSKGNE QESMARLKKL MTIMDSMNDQ  60
   61 ELDSTDGAKV FSKQPGRIQR VARGSGVSTR DVQELLTQYT KFAQMVKKM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	2j37W
Description:	No description for 2j37W was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits