YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|48425364, gi\|...
Organism:	Bacillus subtilis
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|48425364, gi|....

Description	E-value	Query Range	Subject Range
YA83_METJA, Y108... - (Q58483) Hypothetical protein MJ1083, Uncharacterized protein MJ1083 - Methanococcus jannaschii, Iro... ISF2_METJA - Iron-sulfur flavoprotein MJ1083 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL...	150.0	[0..4]	[184..1]
gi\|48855837 - gi\|48855837\|ref\|ZP_00309995.1\| COG2249: Putative NADPH-quinone reductase (modulator of drug activity... gi\|110636819, gi... - gi\|110636819\|ref\|YP_677026.1\| quinone family oxidoreductase/NAD(P)H dehydrogenase [Cytophaga hutchin...	143.0	[0..4]	[181..1]
gi\|118579166, gi... - gi\|71839110\|ref\|ZP_00678864.1\| NAD(P)H dehydrogenase (quinone):NADPH-dependent FMN reductase [Peloba...	142.0	[0..3]	[183..3]
YWQN_BACSU - Putative NAD(P)H-dependent FMN-containing oxidoreductase ywqN OS=Bacillus subtilis GN=ywqN PE=1 SV=1 YWQN_BACSU - Putative NAD(P)H-dependent FMN-containing oxidoreductase YwqN OS=Bacillus subtilis (strain 168) GN=y... gi\|221325096 - gi\|221325096\|ref\|ZP_03606390.1\| hypothetical protein BsubsS_19576 [Bacillus subtilis subsp. subtilis... gi\|221320810 - gi\|221320810\|ref\|ZP_03602104.1\| hypothetical protein BsubsJ_19415 [Bacillus subtilis subsp. subtilis... gi\|221315897 - gi\|221315897\|ref\|ZP_03597702.1\| hypothetical protein BsubsN3_19462 [Bacillus subtilis subsp. subtili...	142.0	[0..4]	[184..1]
gi\|20906133, gi\|... - gi\|21227734\|ref\|NP_633656.1\| iron-sulfur flavoprotein [Methanosarcina mazei Go1], gi\|20906133\|gb\|AAM...	141.0	[0..4]	[181..1]
gi\|89098808, gi\|... - gi\|89098808\|ref\|ZP_01171689.1\| hypothetical protein B14911_05094 [Bacillus sp. NRRL B-14911], gi\|890...	139.0	[0..4]	[181..1]
gi\|72396490, gi\|... - gi\|73669328\|ref\|YP_305343.1\| iron-sulfur flavoprotein [Methanosarcina barkeri str. Fusaro], gi\|72396...	138.0	[0..3]	[184..3]
gi\|44921232, gi\|... - gi\|45358474\|ref\|NP_988031.1\| iron-sulfur flavoprotein [Methanococcus maripaludis S2], gi\|44921232\|em...	138.0	[0..4]	[184..1]
gi\|19914227, gi\|... - gi\|20089336\|ref\|NP_615411.1\| iron-sulfur flavoprotein [Methanosarcina acetivorans C2A], gi\|19914227\|...	138.0	[0..4]	[181..1]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNAMKIAVIN GGTRSGGNTD VLAEKAVQGF DAEHIYLQKY PIQPIEDLRH AQGGFRPVQD  60
   61 DYDSIIERIL QCHILIFATP IYWFGMSGTL KLFIDRWSQT LRDPRFPDFK QQMSVKQAYV 120
  121 IAVGGDNPKI KGLPLIQQFE HIFHFMGMSF KGYVLGEGNR PGDILRDHQA LSAASRLLKR 180
  181 SDAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.30103
Match:	1rliA
Description:	The Structure of Trp Repressor Binding Protein from Bacillus subtilis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits