YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213999983
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213999983.

Description	E-value	Query Range	Subject Range
gi\|199603807, gi... - gi\|200386709\|ref\|ZP_03213321.1\| membrane protein [Salmonella enterica subsp. enterica serovar Vircho... gi\|204929648, gi... - gi\|204929648\|ref\|ZP_03220722.1\| membrane protein [Salmonella enterica subsp. enterica serovar Javian... gi\|197265692, gi... - gi\|197265692\|ref\|ZP_03165766.1\| membrane protein [Salmonella enterica subsp. enterica serovar Saintp... gi\|198244131, gi... - gi\|198244131\|ref\|YP_002216774.1\| membrane protein [Salmonella enterica subsp. enterica serovar Dubli... gi\|194709484, gi... - gi\|194733982\|ref\|YP_002115755.1\| membrane protein [Salmonella enterica subsp. enterica serovar Schwa... ALAE_SALTY - L-alanine exporter AlaE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=alaE PE=3... gi\|197213862, gi... - gi\|197250159\|ref\|YP_002147698.1\| membrane protein [Salmonella enterica subsp. enterica serovar Agona... gi\|194442627, gi... - gi\|194442627\|ref\|YP_002042044.1\| membrane protein [Salmonella enterica subsp. enterica serovar Newpo... gi\|194407669, gi... - gi\|194449365\|ref\|YP_002046762.1\| membrane protein [Salmonella enterica subsp. enterica serovar Heide... gi\|195633238, gi... - gi\|195633238\|gb\|EDX51652.1\| membrane protein [Salmonella enterica subsp. enterica serovar Newport st... gi\|168822886, gi... - gi\|205340783\|gb\|EDZ27547.1\| membrane protein [Salmonella enterica subsp. enterica serovar Weltevrede... gi\|205336584, gi... - gi\|205336584\|gb\|EDZ23348.1\| membrane protein [Salmonella enterica subsp. enterica serovar Heidelberg... gi\|168262093, gi... - gi\|205349030\|gb\|EDZ35661.1\| membrane protein [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|167992520, gi... - gi\|205329295\|gb\|EDZ16059.1\| membrane protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i... lcl\|NC_016856.1_... - [gene=STM14_3380] [protein=putative inner membrane protein] [protein_id=YP_005238895.1] [location=29... gi\|168238714, gi... - gi\|197288494\|gb\|EDY27871.1\| membrane protein [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|161615694, gi... - gi\|161615694\|ref\|YP_001589659.1\| hypothetical protein SPAB_03479 [Salmonella enterica subsp. enteric... gi\|167552702, gi... - gi\|205322685\|gb\|EDZ10524.1\| membrane protein [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|238909571 - gi\|238909571\|ref\|ZP_04653408.1\| hypothetical protein SentesTe_00350 [Salmonella enterica subsp. ente... gi\|205273531, gi... - gi\|205353750\|ref\|YP_002227551.1\| hypothetical protein SG2706 [Salmonella enterica subsp. enterica se... gi\|206709871, gi... - gi\|207858068\|ref\|YP_002244719.1\| hypothetical protein SEN2644 [Salmonella enterica subsp. enterica s...	1.0E-62	[1..149]	[1..149]
gi\|224469111, gi... - gi\|224584584\|ref\|YP_002638382.1\| hypothetical protein SPC_2845 [Salmonella enterica subsp. enterica ... gi\|62128936, gi\|... - gi\|62181303\|ref\|YP_217720.1\| hypothetical protein SC2733 [Salmonella enterica subsp. enterica serova...	2.0E-62	[1..149]	[1..149]
gi\|56414759, gi\|... - gi\|56414759\|ref\|YP_151834.1\| hypothetical protein SPA2658 [Salmonella enterica subsp. enterica serov... gi\|197095164, gi... - gi\|197363687\|ref\|YP_002143324.1\| hypothetical protein SSPA2479 [Salmonella enterica subsp. enterica ...	6.0E-62	[1..149]	[1..149]
gi\|73856719, gi\|... - gi\|74313242\|ref\|YP_311661.1\| hypothetical protein SSON_2815 [Shigella sonnei Ss046], gi\|73856719\|gb\|... gi\|81242187, gi\|... - gi\|82778039\|ref\|YP_404388.1\| hypothetical protein SDY_2860 [Shigella dysenteriae Sd197], gi\|81242187...	1.0E-61	[1..149]	[1..149]
gi\|209920114, gi... - gi\|209920114\|ref\|YP_002294198.1\| hypothetical protein ECSE_2923 [Escherichia coli SE11], gi\|20991337... gi\|209399639, gi... - gi\|209399639\|ref\|YP_002272134.1\| hypothetical protein ECH74115_3912 [Escherichia coli O157:H7 str. E... gi\|217319517, gi... - gi\|217327150\|ref\|ZP_03443233.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|215266062, gi... - gi\|215487990\|ref\|YP_002330421.1\| predicted inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|218696267, gi... - gi\|218696267\|ref\|YP_002403934.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218555218, gi... - gi\|218555218\|ref\|YP_002388131.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|169754006, gi... - gi\|170019078\|ref\|YP_001724032.1\| hypothetical protein EcolC_1036 [Escherichia coli ATCC 8739], gi\|16... gi\|189377165, gi... - gi\|189377165\|gb\|EDU95581.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1688... gi\|170680685, gi... - gi\|170680685\|ref\|YP_001744819.1\| hypothetical protein EcSMS35_2790 [Escherichia coli SMS-3-5], gi\|17... gi\|170082257, gi... - gi\|170082257\|ref\|YP_001731577.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|208726096, gi... - gi\|208806295\|ref\|ZP_03248632.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|195938422 - gi\|195938422\|ref\|ZP_03083804.1\| inner membrane protein [Escherichia coli O157:H7 str. EC4024] gi\|208818619, gi... - gi\|208818619\|ref\|ZP_03258939.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|208813994, gi... - gi\|208813994\|ref\|ZP_03255323.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|168750910, gi... - gi\|188014972\|gb\|EDU53094.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|189367276, gi... - gi\|189367276\|gb\|EDU85692.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|189357256, gi... - gi\|189357256\|gb\|EDU75675.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|168774800, gi... - gi\|187769643\|gb\|EDU33487.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|168768758, gi... - gi\|189362081\|gb\|EDU80500.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|168789573, gi... - gi\|189370865\|gb\|EDU89281.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168778649, gi... - gi\|189003429\|gb\|EDU72415.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|238862568, gi... - gi\|238901814\|ref\|YP_002927610.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... gi\|251785959, gi... - gi\|251785959\|ref\|YP_003000263.1\| hypothetical protein B21_02490 [Escherichia coli BL21], gi\|24237823... gi\|254289368, gi... - gi\|254289368\|ref\|YP_003055116.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|254037712, gi... - gi\|254037712\|ref\|ZP_04871770.1\| inner membrane protein [Escherichia sp. 1_1_43], gi\|226839336\|gb\|EEH... gi\|254162607, gi... - gi\|254162607\|ref\|YP_003045715.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|254794615, gi... - gi\|254794615\|ref\|YP_003079452.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... YGAW_ECOLI - Hypothetical protein ygaW - Escherichia coli ALAE_ECOL6 - L-alanine exporter AlaE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=alaE PE=3 ... YGAW_ECOL6 - Uncharacterized protein ygaW OS=Escherichia coli O6 GN=ygaW PE=4 SV=1 gi\|24113974, gi\|... - gi\|24113974\|ref\|NP_708484.1\| hypothetical protein SF2698 [Shigella flexneri 2a str. 301], gi\|2405308... EG13525 - alanine exporter, alanine-inducible, stress-responsive / Alanine exporter, inducible; stress-respons... ALAE_SHIFL - L-alanine exporter AlaE OS=Shigella flexneri GN=alaE PE=3 SV=1 gi\|30064038, gi\|... - gi\|30064038\|ref\|NP_838209.1\| hypothetical protein S2884 [Shigella flexneri 2a str. 2457T], gi\|300422... gi\|15803188, gi\|... - gi\|15803188\|ref\|NP_289220.1\| hypothetical protein Z3970 [Escherichia coli O157:H7 EDL933], gi\|125171... ALAE_ECO57 - L-alanine exporter AlaE OS=Escherichia coli O157:H7 GN=alaE PE=3 SV=1 gi\|193071018, gi... - gi\|75234113\|ref\|ZP_00718524.1\| hypothetical protein EcolE1_01003947 [Escherichia coli E110019], gi\|1... gi\|191171461, gi... - gi\|75241617\|ref\|ZP_00725454.1\| hypothetical protein EcolF_01001323 [Escherichia coli F11], gi\|191171... gi\|124528042, gi... - gi\|124528042\|ref\|ZP_01699395.1\| protein of unknown function DUF1144 [Escherichia coli B], gi\|1245009... gi\|193065972, gi... - gi\|75255967\|ref\|ZP_00727691.1\| hypothetical protein EcolE2_01004046 [Escherichia coli E22], gi\|19306... gi\|188494057, gi... - gi\|75513241\|ref\|ZP_00735683.1\| hypothetical protein Ecol5_01002724 [Escherichia coli 53638], gi\|1884... gi\|82545251, gi\|... - gi\|82545251\|ref\|YP_409198.1\| hypothetical protein SBO_2849 [Shigella boydii Sb227], gi\|81246662\|gb\|A... gi\|85675516, gi\|... - gi\|89109463\|ref\|AP_003243.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|187731414, gi... - gi\|75178697\|ref\|ZP_00698733.1\| hypothetical protein SboyB_01001086 [Shigella boydii BS512], gi\|18773... gi\|75187395, gi\|... - gi\|75187395\|ref\|ZP_00700662.1\| hypothetical protein EcolE_01000626 [Escherichia coli E24377A], gi\|15... gi\|75196651, gi\|... - gi\|75196651\|ref\|ZP_00706721.1\| hypothetical protein EcolH_01002462 [Escherichia coli HS], gi\|1571621... gi\|75210875, gi\|... - gi\|75210875\|ref\|ZP_00710999.1\| hypothetical protein EcolB_01001940 [Escherichia coli B171], gi\|19442... gi\|75229751, gi\|... - gi\|75229751\|ref\|ZP_00716281.1\| hypothetical protein EcolB7_01002012 [Escherichia coli B7A], gi\|19116... gi\|110616245, gi... - gi\|110806697\|ref\|YP_690217.1\| hypothetical protein SFV_2833 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|83569969, gi\|... - gi\|83569969\|ref\|ZP_00921417.1\| hypothetical protein Sdys1_01001846 [Shigella dysenteriae 1012], gi\|1... gi\|83585163, gi\|... - gi\|83585163\|ref\|ZP_00923814.1\| hypothetical protein Ecol1_01003632 [Escherichia coli 101-1], gi\|1944... EG13525 - alanine exporter, alanine-inducible, stress-responsive / Alanine exporter, inducible; stress-respons... gi\|13363002, gi\|... - gi\|15832785\|ref\|NP_311558.1\| hypothetical protein ECs3531 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110344385, gi... - gi\|110642793\|ref\|YP_670523.1\| hypothetical protein ECP_2633 [Escherichia coli 536], gi\|110344385\|gb\|...	1.0E-61	[1..149]	[1..149]
gi\|218366429, gi... - gi\|218559660\|ref\|YP_002392573.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218706168, gi... - gi\|218706168\|ref\|YP_002413687.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|237706710, gi... - gi\|237706710\|ref\|ZP_04537191.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|91073602, gi\|... - gi\|91212028\|ref\|YP_542014.1\| hypothetical protein UTI89_C3027 [Escherichia coli UTI89], gi\|91073602\|... gi\|117624905, gi... - gi\|117624905\|ref\|YP_853821.1\| hypothetical protein APECO1_3852 [Escherichia coli APEC O1], gi\|115514...	4.0E-61	[1..149]	[1..149]
gi\|28806057, gi\|... - gi\|28897844\|ref\|NP_797449.1\| hypothetical protein VP1070 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|28806057 - gi\|28806057\|dbj\|BAC59333.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|149748564, gi... - gi\|153838030\|ref\|ZP_01990697.1\| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810], gi\|...	8.0E-61	[8..147]	[9..148]
gi\|124124043, gi... - gi\|153800417\|ref\|ZP_01955003.1\| conserved hypothetical protein [Vibrio cholerae MZO-3], gi\|124124043... gi\|153819805, gi... - gi\|153819805\|ref\|ZP_01972472.1\| conserved hypothetical protein [Vibrio cholerae NCTC 8457], gi\|12650... gi\|75830172, gi\|... - gi\|75830172\|ref\|ZP_00759455.1\| hypothetical protein VchoM_01001827 [Vibrio cholerae MO10], gi\|254848... gi\|153821158, gi... - gi\|229511688\|ref\|ZP_04401167.1\| hypothetical protein VCE_003097 [Vibrio cholerae B33], gi\|229351653\|... gi\|75827156, gi\|... - gi\|75827156\|ref\|ZP_00756591.1\| hypothetical protein VchoO_01001316 [Vibrio cholerae O395], gi\|227118... gi\|75820853, gi\|... - gi\|75820853\|ref\|ZP_00750892.1\| hypothetical protein VchoV5_01000300 [Vibrio cholerae V51], gi\|116221... gi\|227081957, gi... - gi\|227081957\|ref\|YP_002810508.1\| hypothetical protein VCM66_1751 [Vibrio cholerae M66-2], gi\|2270098... gi\|229355578, gi... - gi\|229508073\|ref\|ZP_04397578.1\| hypothetical protein VCF_003307 [Vibrio cholerae BX 330286], gi\|2293... gi\|229518827, gi... - gi\|229518827\|ref\|ZP_04408270.1\| hypothetical protein VCC_002852 [Vibrio cholerae RC9], gi\|229343516\|... gi\|229607634, gi... - gi\|229607634\|ref\|YP_002878282.1\| hypothetical protein VCD_002546 [Vibrio cholerae MJ-1236], gi\|22937... ALAE_VIBCH - L-alanine exporter AlaE OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=... gi\|121585799, gi... - gi\|121585799\|ref\|ZP_01675593.1\| conserved hypothetical protein [Vibrio cholerae 2740-80], gi\|1215499... gi\|11292718 - pir\|\|H82150 conserved hypothetical protein VC1828 [imported] - Vibrio cholerae (strain N16961 serogr... gi\|153214292, gi... - gi\|153214292\|ref\|ZP_01949309.1\| conserved hypothetical protein [Vibrio cholerae 1587], gi\|124115440\|... gi\|153221549, gi... - gi\|153221549\|ref\|ZP_01952488.1\| conserved hypothetical protein [Vibrio cholerae MAK 757], gi\|1241195... gi\|149740026, gi... - gi\|153826261\|ref\|ZP_01978928.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149740026...	9.0E-60	[8..144]	[9..145]
gi\|229342657, gi... - gi\|229520291\|ref\|ZP_04409717.1\| hypothetical protein VIF_000811 [Vibrio cholerae TM 11079-80], gi\|22... gi\|229347915, gi... - gi\|229515210\|ref\|ZP_04404670.1\| hypothetical protein VCB_002867 [Vibrio cholerae TMA 21], gi\|2293479... gi\|150424502, gi... - gi\|254285230\|ref\|ZP_04960195.1\| conserved hypothetical protein [Vibrio cholerae AM-19226], gi\|197753... gi\|121727627, gi... - gi\|75814713\|ref\|ZP_00745269.1\| hypothetical protein VchoV_01002580 [Vibrio cholerae V52], gi\|1217276...	2.0E-59	[8..144]	[9..145]
tr\|D7H9P5\|D7H9P5... - L-alanine exporter AlaE OS=Vibrio cholerae RC385 GN=alaE PE=3 SV=1 gi\|116216860, gi... - gi\|75823655\|ref\|ZP_00753143.1\| hypothetical protein VchoR_01001253 [Vibrio cholerae RC385], gi\|11621...	3.0E-59	[8..144]	[9..145]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSPQSRLRH AVADTFAMVV HCSVVNMLIE IFLSGMSFEQ SLSSRLVAIP VNILIAWPYG  60
   61 VYRDLIMRVA RKASPAGWAK NLADVLAYVT FQSPVYIIIL LTVGAGWHQI VAAVSSNIVV 120
  121 SMLMGAVYGY FLNYCRRLFK VSSYHQAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	114.267606
Match:	PF06610.4
Description:	No description for PF06610.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits