YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213647191
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213647191.

Description	E-value	Query Range	Subject Range
gi\|62130255, gi\|... - gi\|62182622\|ref\|YP_219039.1\| hypothetical protein SC4052 [Salmonella enterica subsp. enterica serova... gi\|224585711, gi... - gi\|224585711\|ref\|YP_002639510.1\| hypothetical protein SPC_4002 [Salmonella enterica subsp. enterica ...	0.0	[1..230]	[1..230]
gi\|6960344, gi\|1... - gi\|6960344\|gb\|AAF33504.1\| 74% identity over 170 of 231 amino acids with E. coli hypothetical 26.3 kD... gi\|167994973, gi... - gi\|205327249\|gb\|EDZ14013.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=yjaH] [protein=putative inner membrane protein] [protein_id=YP_005240453.1] [location=4400574....	0.0	[1..230]	[1..230]
gi\|56130254, gi\|... - gi\|56415997\|ref\|YP_153072.1\| hypothetical protein SPA4008 [Salmonella enterica subsp. enterica serov... gi\|194404958, gi... - gi\|194446295\|ref\|YP_002043419.1\| hypothetical protein SNSL254_A4504 [Salmonella enterica subsp. ente... gi\|168467897, gi... - gi\|195629013\|gb\|EDX48405.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|161617310, gi... - gi\|161617310\|ref\|YP_001591275.1\| hypothetical protein SPAB_05161 [Salmonella enterica subsp. enteric...	0.0	[1..230]	[1..230]
gi\|26111203, gi\|... - gi\|26250772\|ref\|NP_756812.1\| hypothetical protein c4958 [Escherichia coli CFT073], gi\|26111203\|gb\|AA...	8.0E-97	[1..230]	[3..233]
EG11917 - DUF1481 family putative lipoprotein / DUF1481 family probable lipoprotein, function unknown gi\|238860562, gi... - gi\|238903058\|ref\|YP_002928854.1\| hypothetical protein BWG_3661 [Escherichia coli BW2952], gi\|2388605... gi\|187732728, gi... - gi\|187732728\|ref\|YP_001882687.1\| hypothetical protein SbBS512_E4492 [Shigella boydii CDC 3083-94], g... gi\|170083462, gi... - gi\|170083462\|ref\|YP_001732782.1\| hypothetical protein ECDH10B_4190 [Escherichia coli str. K-12 subst... YJAH_ECOLI - Hypothetical protein yjaH - Escherichia coli gi\|89110037, gi\|... - gi\|89110037\|ref\|AP_003817.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... EG11917 - DUF1481 family putative lipoprotein / DUF1481 family probable lipoprotein, function unknown gi\|73857972, gi\|... - gi\|74314495\|ref\|YP_312914.1\| hypothetical protein SSON_4174 [Shigella sonnei Ss046], gi\|73857972\|gb\|... gi\|81247754, gi\|... - gi\|82546343\|ref\|YP_410290.1\| hypothetical protein SBO_4022 [Shigella boydii Sb227], gi\|81247754\|gb\|A...	5.0E-96	[1..230]	[1..231]
gi\|157069150, gi... - gi\|157163470\|ref\|YP_001460788.1\| hypothetical protein EcHS_A4235 [Escherichia coli HS], gi\|157069150... gi\|218372622, gi... - gi\|218702636\|ref\|YP_002410265.1\| hypothetical protein ECIAI39_4391 [Escherichia coli IAI39], gi\|2183... gi\|218707620, gi... - gi\|218707620\|ref\|YP_002415139.1\| hypothetical protein ECUMN_4525 [Escherichia coli UMN026], gi\|21843... gi\|56384055, gi\|... - gi\|56480504\|ref\|NP_709795.2\| hypothetical protein SF4073 [Shigella flexneri 2a str. 301], gi\|5638405... gi\|218692282, gi... - gi\|218692282\|ref\|YP_002400494.1\| hypothetical protein ECED1_4708 [Escherichia coli ED1a], gi\|2184298... gi\|242379532, gi... - gi\|251787259\|ref\|YP_003001563.1\| hypothetical protein B21_03831 [Escherichia coli BL21], gi\|24237953... gi\|81242971, gi\|... - gi\|82778823\|ref\|YP_405172.1\| hypothetical protein SDY_3725 [Shigella dysenteriae Sd197], gi\|81242971... gi\|218354441, gi... - gi\|218697709\|ref\|YP_002405376.1\| hypothetical protein EC55989_4486 [Escherichia coli 55989], gi\|2183... gi\|218363325, gi... - gi\|218556556\|ref\|YP_002389470.1\| hypothetical protein ECIAI1_4216 [Escherichia coli IAI1], gi\|218363... gi\|218367836, gi... - gi\|218561067\|ref\|YP_002393980.1\| hypothetical protein ECS88_4462 [Escherichia coli S88], gi\|21836783... gi\|209914739, gi... - gi\|209921480\|ref\|YP_002295564.1\| hypothetical protein ECSE_4289 [Escherichia coli SE11], gi\|20991473... gi\|215267405, gi... - gi\|215489333\|ref\|YP_002331764.1\| hypothetical protein E2348C_4308 [Escherichia coli O127:H6 str. E23... gi\|209751668, gi... - gi\|209751674\|gb\|ACI74144.1\| hypothetical protein ECs4924 [Escherichia coli], gi\|209751668\|gb\|ACI7414... gi\|30064717, gi\|... - gi\|30064717\|ref\|NP_838888.1\| hypothetical protein S3662 [Shigella flexneri 2a str. 2457T], gi\|300429... gi\|253975844, gi... - gi\|254163943\|ref\|YP_003047051.1\| hypothetical protein ECB_03878 [Escherichia coli B str. REL606], gi... gi\|188494115, gi... - gi\|188494115\|ref\|ZP_03001385.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848931... gi\|253326413, gi... - gi\|254290693\|ref\|YP_003056441.1\| hypothetical protein ECD_03878 [Escherichia coli BL21(DE3)], gi\|253... gi\|157156532, gi... - gi\|157156532\|ref\|YP_001465496.1\| hypothetical protein EcE24377A_4544 [Escherichia coli E24377A], gi\|...	7.0E-96	[1..230]	[1..231]
gi\|24115285, gi\|... - ref\|NP_709795.1\| hypothetical protein SF4073 [Shigella flexneri 2a str. 301], gb\|AAN45502.1\| orf, c... gi\|226903081, gi... - gi\|237702768\|ref\|ZP_04533249.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117626263, gi... - gi\|117626263\|ref\|YP_859586.1\| hypothetical protein APECO1_2474 [Escherichia coli APEC O1], gi\|115515... gi\|91212792, gi\|... - gi\|91212792\|ref\|YP_542778.1\| hypothetical protein UTI89_C3818 [Escherichia coli UTI89], gi\|91074366\|...	9.0E-96	[1..230]	[3..233]
gi\|209751672, gi... - pir\|\|D91244 hypothetical protein ECs4924 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15834178, gi\|... - gi\|15834178\|ref\|NP_312951.1\| hypothetical protein ECs4924 [Escherichia coli O157:H7], gi\|13364400\|db... gi\|15834178, gi\|... - gi\|15834178\|ref\|NP_312951.1\| hypothetical protein ECs4924 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254795999, gi... - gi\|254795999\|ref\|YP_003080836.1\| hypothetical protein ECSP_5071 [Escherichia coli O157:H7 str. TW143...	3.0E-95	[1..230]	[1..231]
gi\|12518930, gi\|... - gi\|15804592\|ref\|NP_290633.1\| hypothetical protein Z5577 [Escherichia coli O157:H7 EDL933], gi\|125189... gi\|25332704 - pir\|\|B86092 hypothetical protein yjaH [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	1.0E-94	[1..230]	[1..231]
gi\|75179638 - gi\|75179638\|ref\|ZP_00699642.1\| hypothetical protein SboyB_01000753 [Shigella boydii BS512] gi\|190901295, gi... - gi\|75228128\|ref\|ZP_00714797.1\| hypothetical protein EcolB7_01003526 [Escherichia coli B7A], gi\|19116...	5.0E-87	[21..230]	[1..211]

Back

Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFIEGACQ PLLSVWRRAF LFSGALLLTA CSHNASPPPF TASGFAGDHG AVRIWRKDTN  60
   61 DEVHLLSVFS PWHSGSTTTS EYRWQGDTLS LIELNIYSKP PEHIRARFDA HGELSFMQRE 120
  121 VGGQKQQLSN DQIALYRYRA EQIRQTSDAL RLGRVILRQG RWHADHTVTT CEGETLKPDL 180
  181 DSWAISHIER RQNHSSVEVS VAWLEAPEGS QLLLVANSDF CHWQPQAKTF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits