YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34811431, gi\|...
Organism:	Homo sapiens
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34811431, gi|....

Description	E-value	Query Range	Subject Range
gi\|50754515 - gi\|50754515\|ref\|XP_414418.1\| PREDICTED: similar to MAGI1c alpha beta2 gamma [Gallus gallus]	101.0	[0..4]	[81..2267]
gi\|73965068 - gi\|73965068\|ref\|XP_540418.2\| PREDICTED: similar to Ezrin-radixin-moesin binding phosphoprotein 50 (E...	100.0	[0..1]	[81..146]
MAGI1_MOUSE - Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1 OS=Mus musculus GN=Magi...	100.0	[0..1]	[81..984]
gi\|47219014 - gi\|47219014\|emb\|CAG02052.1\| unnamed protein product [Tetraodon nigroviridis]	100.0	[0..2]	[81..1047]
ENSMMUG000000057... - null, null NHRF1_MACFA - Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Macaca fascicularis GN=SLC9A3R1 PE=2 SV=1	100.0	[0..1]	[81..8]
NHRF1_RAT - Na(+)/H(+) exchange regulatory cofactor NHE-RF1 OS=Rattus norvegicus GN=Slc9a3r1 PE=1 SV=3	100.0	[0..1]	[81..8]

Back

Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAMDPRTITM HKDSTGHVGF IFKNGKITSI VKDSSAARNG LLTEHNICEI NGQNVIGLKD  60
   61 SQIADILSTS GTVVTITIMP AF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	1nteA
Description:	Syntenin 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.566291652083235	bayes_pls_golite062009
protein binding	0.52823753548825	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: