YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197364319, gi...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601
Length:	55 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197364319, gi....

Description	E-value	Query Range	Subject Range
YHFG_SALTY - Uncharacterized protein yhfG OS=Salmonella typhimurium GN=yhfG PE=4 SV=1 gi\|200387790, gi... - gi\|200387790\|ref\|ZP_03214402.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YHFG_SALTY - Uncharacterized protein YhfG OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yhfG... lcl\|NC_016856.1_... - [gene=yhfG] [protein=hypothetical protein] [protein_id=YP_005239664.1] [location=complement(3634805.... gi\|195632264, gi... - gi\|195632264\|gb\|EDX50748.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197242760, gi... - gi\|197264505\|ref\|ZP_03164579.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YHFG_SALTY - Uncharacterized protein yhfG OS=Salmonella typhimurium GN=yhfG PE=4 SV=1	77.0	[0..1]	[55..1]
gi\|81242791, gi\|... - gi\|82778643\|ref\|YP_404992.1\| hypothetical protein SDY_3524 [Shigella dysenteriae Sd197], gi\|81242791... YHFG_ECOLI - Hypothetical protein yhfG - Escherichia coli gi\|218353775, gi... - gi\|218697043\|ref\|YP_002404710.1\| hypothetical protein EC55989_3768 [Escherichia coli 55989], gi\|2183... YHFG_ECO57 - Uncharacterized protein YhfG OS=Escherichia coli O157:H7 GN=yhfG PE=4 SV=1 EG12374 - putative antitoxin for Fic / Putative antitoxin for Fic gi\|15803876, gi\|... - gi\|15803876\|ref\|NP_289910.1\| hypothetical protein Z4723 [Escherichia coli O157:H7 EDL933], gi\|125179... gi\|89110647, gi\|... - gi\|89110647\|ref\|AP_004427.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|13363686, gi\|... - gi\|15833467\|ref\|NP_312240.1\| hypothetical protein ECs4213 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|195934860 - gi\|195934860\|ref\|ZP_03080242.1\| hypothetical protein EscherichcoliO157_00110 [Escherichia coli O157:... gi\|254795286, gi... - gi\|254795286\|ref\|YP_003080123.1\| hypothetical protein ECSP_4320 [Escherichia coli O157:H7 str. TW143... gi\|170082880, gi... - gi\|170082880\|ref\|YP_001732200.1\| hypothetical protein ECDH10B_3538 [Escherichia coli str. K-12 subst... gi\|238902454, gi... - gi\|238902454\|ref\|YP_002928250.1\| hypothetical protein BWG_3054 [Escherichia coli BW2952], gi\|2388629... gi\|189380105, gi... - gi\|189380105\|gb\|EDU98521.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189374675, gi... - gi\|189374675\|gb\|EDU93091.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|209158601, gi... - gi\|209397201\|ref\|YP_002272804.1\| hypothetical protein ECH74115_4672 [Escherichia coli O157:H7 str. E... gi\|208738298, gi... - gi\|208818175\|ref\|ZP_03258495.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208813932, gi... - gi\|208813932\|ref\|ZP_03255261.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208725553, gi... - gi\|208805752\|ref\|ZP_03248089.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|188014198, gi... - gi\|188014198\|gb\|EDU52320.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... EG12374 - putative antitoxin for Fic / Putative antitoxin for Fic gi\|189002602, gi... - gi\|189002602\|gb\|EDU71588.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168772740, gi... - gi\|187771628\|gb\|EDU35472.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189364416, gi... - gi\|189364416\|gb\|EDU82835.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|189359314, gi... - gi\|189359314\|gb\|EDU77733.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g...	72.0	[0..1]	[55..1]
gi\|81247124, gi\|... - gi\|82545713\|ref\|YP_409660.1\| hypothetical protein SBO_3344 [Shigella boydii Sb227], gi\|81247124\|gb\|A...	71.0	[0..1]	[55..1]
gi\|218702111, gi... - gi\|218702111\|ref\|YP_002409740.1\| hypothetical protein ECIAI39_3846 [Escherichia coli IAI39], gi\|2183... gi\|254038525, gi... - gi\|254038525\|ref\|ZP_04872581.1\| predicted protein [Escherichia sp. 1_1_43], gi\|226839031\|gb\|EEH71054... gi\|218358166, gi... - gi\|218550625\|ref\|YP_002384416.1\| hypothetical protein EFER_3335 [Escherichia fergusonii ATCC 35469],... gi\|218362676, gi... - gi\|218555908\|ref\|YP_002388821.1\| hypothetical protein ECIAI1_3501 [Escherichia coli IAI1], gi\|218362... gi\|194426995, gi... - gi\|194426995\|ref\|ZP_03059547.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194414956... gi\|209914074, gi... - gi\|209920815\|ref\|YP_002294899.1\| hypothetical protein ECSE_3624 [Escherichia coli SE11], gi\|20991407... gi\|170018401, gi... - gi\|170018401\|ref\|YP_001723355.1\| hypothetical protein EcolC_0350 [Escherichia coli ATCC 8739], gi\|16... gi\|24114627, gi\|... - gi\|24114627\|ref\|NP_709137.1\| hypothetical protein SF3381 [Shigella flexneri 2a str. 301], gi\|2405382... gi\|110807196, gi... - gi\|110807196\|ref\|YP_690716.1\| hypothetical protein SFV_3368 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|30065352, gi\|... - gi\|30065352\|ref\|NP_839523.1\| hypothetical protein S4382 [Shigella flexneri 2a str. 2457T], gi\|300436... gi\|74313869, gi\|... - gi\|74313869\|ref\|YP_312288.1\| hypothetical protein SSON_3493 [Shigella sonnei Ss046], gi\|73857346\|gb\|...	70.0	[0..1]	[55..1]
gi\|227839377, gi... - gi\|227883498\|ref\|ZP_04001303.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783937... gi\|215488649, gi... - gi\|215488649\|ref\|YP_002331080.1\| hypothetical protein E2348C_3612 [Escherichia coli O127:H6 str. E23... gi\|226902359, gi... - gi\|237703095\|ref\|ZP_04533576.1\| predicted protein [Escherichia sp. 3_2_53FAA], gi\|226902359\|gb\|EEH88... gi\|110345194, gi... - gi\|110643602\|ref\|YP_671332.1\| hypothetical protein ECP_3453 [Escherichia coli 536], gi\|110345194\|gb\|... gi\|91212839, gi\|... - gi\|91212839\|ref\|YP_542825.1\| hypothetical protein UTI89_C3865 [Escherichia coli UTI89], gi\|91074413\|... gi\|26249961, gi\|... - gi\|26249961\|ref\|NP_756001.1\| hypothetical protein c4137 [Escherichia coli CFT073], gi\|26110389\|gb\|AA... gi\|218367194, gi... - gi\|218560425\|ref\|YP_002393338.1\| hypothetical protein ECS88_3753 [Escherichia coli S88], gi\|21836719... gi\|218691644, gi... - gi\|218691644\|ref\|YP_002399856.1\| hypothetical protein ECED1_4026 [Escherichia coli ED1a], gi\|2184292...	58.0	[0..1]	[55..1]

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Predicted Domain #1

Region A:
Residues: [1-55]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLTDKQKS RFWEQRRNVN FQQSRRLEGI EIPLVTLTAD EALARLDELR RHYER

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits