YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221141593
Organism:	Staphylococcus aureus subsp. aureus str. JKD6009
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221141593.

Description	E-value	Query Range	Subject Range
ACPS_STAEQ - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=ac... ACPS_STAEP - (Q8CNK6) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7) (Holo-ACP synthase) (4'-phosphopantethein... ACPS_STAES - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=acpS PE=3 ...	150.0	[0..1]	[117..1]
gi\|269203706\|ref... - 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aureus ED98] ACPS_STAAW - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain MW2) GN=acpS PE=3 SV=1 ACPS_STAAN - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain N315) GN=acpS PE=3 SV=1 ACPS_STAAM - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=acpS PE... gi\|227558846, gi... - gi\|227558846\|ref\|ZP_03988893.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus MN8], gi\|2272... ACPS_STAAS - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain MSSA476) GN=acpS PE=3 SV=1 gi\|227899590, gi... - gi\|227899590\|ref\|ZP_04017395.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus TCH60], gi\|22... gi\|251812358, gi... - gi\|251812358\|ref\|ZP_04826831.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus TCH70], gi\|25... gi\|25304180 - pir\|\|E89999 holo-ACP synthase [imported] - Staphylococcus aureus (strain N315) ACPS_STAAB - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=acpS ... gi\|253315701 - gi\|253315701\|ref\|ZP_04838914.1\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... ACPS_STAAR - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain MRSA252) GN=acpS PE=3 SV=1 gi\|253728928, gi... - gi\|253733095\|ref\|ZP_04867260.1\| holo-ACP synthase [Staphylococcus aureus subsp. aureus TCH130], gi\|2... ACPS_STAA2 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain JH1) GN=acpS PE=3 SV=1 gi\|255006860 - gi\|255006860\|ref\|ZP_05145461.2\| 4'-phosphopantetheinyl transferase [Staphylococcus aureus subsp. aur... ACPS_STAA9 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain JH9) GN=acpS PE=3 SV=1 ACPS_STAA1 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=acpS PE=...	147.0	[0..1]	[119..1]
ACPS_STAS1 - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain AT...	147.0	[0..1]	[115..1]
gi\|221086403, gi... - gi\|221086403\|ref\|ZP_03555945.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC61], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus (strain HTA426) GN=acpS PE=3 SV=1 gi\|229499573, gi... - gi\|229499573\|ref\|ZP_04393256.1\| holo-acyl-carrier-protein synthase [Geobacillus sp. Y412MC52], gi\|22... ACPS_GEOKA - Holo-[acyl-carrier-protein] synthase OS=Geobacillus kaustophilus GN=acpS PE=3 SV=1	144.0	[0..1]	[116..1]
ACPS_STAHJ - Holo-[acyl-carrier-protein] synthase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=acpS PE=3 S...	143.0	[0..1]	[118..1]
ACPS_EXIS2 - Holo-[acyl-carrier-protein] synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 25...	141.0	[0..1]	[118..1]
ACPS_LACLM - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=acpS P... ACPS_LACLS - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=acpS PE=...	139.0	[0..1]	[117..1]
ACPS_LACLA - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=acpS PE=... ACPS_LACLA - Holo-[acyl-carrier-protein] synthase OS=Lactococcus lactis subsp. lactis GN=acpS PE=3 SV=1	138.0	[0..1]	[117..1]
ACPS_STRTD - Holo-[acyl-carrier-protein] synthase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=...	137.0	[0..1]	[117..1]
ACPS_STRA5 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype V GN=acpS PE=3 SV=1 ACPS_STRA1 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype Ia GN=acpS PE=3 SV=1 ACPS_STRA3 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype III GN=acpS PE=3 SV=1 ACPS_STRA1 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A9... gi\|77414521, gi\|... - gi\|77414521\|ref\|ZP_00790667.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae 515], ... gi\|77161538, gi\|... - gi\|77412403\|ref\|ZP_00788711.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae CJB111... gi\|77172390, gi\|... - gi\|77409006\|ref\|ZP_00785726.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae COH1],... ACPS_STRA3 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=acp... gi\|77406431, gi\|... - gi\|77406431\|ref\|ZP_00783489.1\| holo-(acyl-carrier-protein) synthase [Streptococcus agalactiae H36B],... ACPS_STRA5 - Holo-[acyl-carrier-protein] synthase OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2...	137.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHGIGVDLI EIDRIQALYS KQPKLVERIL TKNEQHKFNN FTHEQRKIEF LAGRFATKEA  60
   61 FSKALGTGLG KHVAFNDIDC YNDELGKPKI DYEGFIVHVS ISHTEHYAMS QVVLEKSAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1f7tA
Description:	Holo-(acyl carrier protein) synthase ACPS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits