YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213646267
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213646267.

Description	E-value	Query Range	Subject Range
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	5.0E-73	[20..463]	[38..511]
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	2.0E-70	[20..406]	[970..1384]
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	3.0E-70	[20..463]	[1098..1543]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	1.0E-67	[10..463]	[65..546]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	1.0E-67	[2..463]	[68..551]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	4.0E-67	[1..463]	[113..612]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	5.0E-67	[23..463]	[145..615]

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Predicted Domain #1

Region A:
Residues: [1-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNASTASGA SVSDAASKNE PTLQRGLQNR HIQLIALGGA IGTGLFLGIG PAIQMAGPAV  60
   61 LLGYGVAGII AFLIMRQLGE MVVEEPVSGS FAHFAWKYWG PFAGFLSGWN YWVMFVLVGM 120
  121 AELTAAGIYM QYWLPDVPTW VWAAVFFIII NAVNLVNVRL YGETEFWFAL IKVLAIIGMI 180
  181 GFGLWLLFSG HGGEHASIDN LWRYNGFFAT GWHGLLLSLA VIMFSFGGLE LIGITAAEAR 240
  241 DPQKSIPKAV NQVVYRILLF YIGSLVVLLA LYPWVEVKSN SSPFVMIFHN LDSNVVASAL 300
  301 NFVILVASLS VYNSGVYSNS RMLFGLSVQG NAPKFLTRVS HRGVPVNSLM LSGAITSLVV 360
  361 LINYLLPQKA FSLLMALVVA TLLLNWIMIC LAHLRFRAAM RRKGRETQFK ALFYPAGNYL 420
  421 CIAFLALILV LMCTMDDMRL SAILLPVWIV FLFIAFTVLR RKAH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.18
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits