YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|208966076
Organism:	synthetic construct
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|208966076.

Description	E-value	Query Range	Subject Range
gi\|76634466 - gi\|76634466\|ref\|XP_583747.2\| PREDICTED: similar to COP9 signalosome subunit 5 isoform 1 [Bos taurus]	0.0	[1..334]	[1..334]
gi\|60834645 - gi\|60834645\|gb\|AAX37104.1\| COP9 constitutive photomorphogenic-like subunit 5 [synthetic construct]	0.0	[1..334]	[1..334]
gi\|57107765 - gi\|57107765\|ref\|XP_535093.1\| PREDICTED: similar to COP9 signalosome complex subunit 5 (Signalosome s...	0.0	[1..334]	[1..334]
CSN5_MOUSE - COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3	0.0	[1..334]	[1..334]
gi\|1549383, gi\|7... - pir\|\|S71820 JUN-activation-domain-binding protein 1 - human, gi\|1549383\|gb\|AAB16847.1\| Jun activati...	1.0E-99	[1..334]	[1..334]
gi\|71043620, gi\|... - gi\|71043620\|ref\|NP_001020866.1\| COP9 constitutive photomorphogenic homolog subunit 5 [Rattus norvegi...	2.0E-99	[1..334]	[1..334]
gi\|114640002, gi... - gi\|55637143\|ref\|XP_522159.1\| PREDICTED: similar to COP9 constitutive photomorphogenic homolog subuni...	2.0E-99	[1..334]	[1..334]
gi\|28317149 - gi\|28317149\|gb\|AAD27862.2\|AF132563_1 LD14392p [Drosophila melanogaster]	3.0E-99	[6..333]	[21..343]

Back

Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASGSGMAQ KTWELANNMQ EAQSIDEIYK YDKKQQQEIL AAKPWTKDHH YFKYCKISAL  60
   61 ALLKMVMHAR SGGNLEVMGL MLGKVDGETM IIMDSFALPV EGTETRVNAQ AAAYEYMAAY 120
  121 IENAKQVGRL ENAIGWYHSH PGYGCWLSGI DVSTQMLNQQ FQEPFVAVVI DPTRTISAGK 180
  181 VNLGAFRTYP KGYKPPDEGP SEYQTIPLNK IED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.30103
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [214-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGVHCKQYYA LEVSYFKSSL DRKLLELLWN KYWVNTLSSS SLLTNADYTT GQVFDLSEKL  60
   61 EQSEAQLGRG SFMLGLETHD RKSEDKLAKA TRDSCKTTIE AIHGLMSQVI KDKLFNQINI 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits