YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213580770
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-0664
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213580770.

Description	E-value	Query Range	Subject Range
gi\|197247854, gi... - gi\|197247854\|ref\|YP_002146879.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar A... YCEB_SALTY - Uncharacterized lipoprotein yceB OS=Salmonella typhimurium GN=yceB PE=4 SV=2 gi\|197242815, gi... - gi\|197264560\|ref\|ZP_03164634.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Sa... gi\|197940750, gi... - gi\|198246234\|ref\|YP_002215973.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar D... gi\|207857328, gi... - gi\|207857328\|ref\|YP_002243979.1\| hypothetical protein SEN1884 [Salmonella enterica subsp. enterica s... gi\|197289763, gi... - gi\|197289763\|gb\|EDY29124.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Schwar... gi\|195630443, gi... - gi\|195630443\|gb\|EDX49069.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar Newpor... gi\|194443270, gi... - gi\|194443270\|ref\|YP_002040418.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar N... gi\|62127315, gi\|... - gi\|62179682\|ref\|YP_216099.1\| hypothetical protein SC1112 [Salmonella enterica subsp. enterica serova... gi\|194734955, gi... - gi\|194734955\|ref\|YP_002114163.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar S... gi\|161614616, gi... - gi\|161614616\|ref\|YP_001588581.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar P... gi\|205328033, gi... - gi\|205328033\|gb\|EDZ14797.1\| putative lipoprotein [Salmonella enterica subsp. enterica serovar 4,[5],... YCEB_SALTY - Uncharacterized lipoprotein yceB OS=Salmonella typhimurium GN=yceB PE=4 SV=2 gi\|224468859, gi... - gi\|224584332\|ref\|YP_002638130.1\| putative outer membrane lipoprotein [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=yceB] [protein=hypothetical protein] [protein_id=YP_005236917.1] [location=complement(1207828.... YCEB_SALTY - Uncharacterized lipoprotein YceB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=...	7.0E-71	[23..208]	[1..186]
gi\|115512373, gi... - gi\|117623249\|ref\|YP_852162.1\| hypothetical protein APECO1_145 [Escherichia coli APEC O1], gi\|1155123... gi\|237706951, gi... - gi\|237706951\|ref\|ZP_04537432.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|110614629, gi... - gi\|110805081\|ref\|YP_688601.1\| hypothetical protein SFV_1085 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|91071789, gi\|... - gi\|91210215\|ref\|YP_540201.1\| hypothetical protein UTI89_C1188 [Escherichia coli UTI89], gi\|91071789\|... gi\|24112474, gi\|... - ref\|NP_706984.1\| hypothetical protein SF1069 [Shigella flexneri 2a str. 301], gb\|AAN42691.1\| orf, c...	2.0E-70	[18..208]	[15..205]
gi\|26107604, gi\|... - gi\|26247203\|ref\|NP_753243.1\| hypothetical protein c1330 [Escherichia coli CFT073], gi\|26107604\|gb\|AA... gi\|227836783, gi... - gi\|227886579\|ref\|ZP_04004384.1\| possible lipoprotein [Escherichia coli 83972], gi\|227836783\|gb\|EEJ47...	3.0E-70	[18..208]	[15..205]
gi\|83586403, gi\|... - gi\|83586403\|ref\|ZP_00925037.1\| hypothetical protein Ecol1_01002297 [Escherichia coli 101-1], gi\|1944... gi\|75175810, gi\|... - gi\|75175810\|ref\|ZP_00696005.1\| hypothetical protein SboyB_01004127 [Shigella boydii BS512], gi\|18773... gi\|238900317, gi... - gi\|238900317\|ref\|YP_002926113.1\| putative lipoprotein [Escherichia coli BW2952], gi\|238862616\|gb\|ACR... gi\|251784594, gi... - gi\|251784594\|ref\|YP_002998898.1\| hypothetical protein B21_01067 [Escherichia coli BL21], gi\|24237686... gi\|253977284, gi... - gi\|254287977\|ref\|YP_003053725.1\| predicted lipoprotein [Escherichia coli BL21(DE3)], gi\|253977284\|gb... gi\|254161169, gi... - gi\|254161169\|ref\|YP_003044277.1\| predicted lipoprotein [Escherichia coli B str. REL606], gi\|25397307... gi\|124531148, gi... - gi\|124531148\|ref\|ZP_01701503.1\| protein of unknown function DUF1439 [Escherichia coli B], gi\|1244987... gi\|89107909, gi\|... - gi\|89107909\|ref\|AP_001689.1\| predicted lipoprotein [Escherichia coli str. K-12 substr. W3110], gi\|40... gi\|218553642, gi... - gi\|218553642\|ref\|YP_002386555.1\| hypothetical protein ECIAI1_1098 [Escherichia coli IAI1], gi\|218360... gi\|110342831, gi... - gi\|110641239\|ref\|YP_668969.1\| hypothetical protein ECP_1055 [Escherichia coli 536], gi\|110342831\|gb\|... gi\|215264344, gi... - gi\|215486272\|ref\|YP_002328703.1\| hypothetical protein E2348C_1153 [Escherichia coli O127:H6 str. E23... gi\|218426580, gi... - gi\|218689016\|ref\|YP_002397228.1\| hypothetical protein ECED1_1207 [Escherichia coli ED1a], gi\|2184265... gi\|218557945, gi... - gi\|218557945\|ref\|YP_002390858.1\| hypothetical protein ECS88_1077 [Escherichia coli S88], gi\|21836471... gi\|218370420, gi... - gi\|218700434\|ref\|YP_002408063.1\| hypothetical protein ECIAI39_2100 [Escherichia coli IAI39], gi\|2183... gi\|218351329, gi... - gi\|218694597\|ref\|YP_002402264.1\| hypothetical protein EC55989_1176 [Escherichia coli 55989], gi\|2183... gi\|169755469, gi... - gi\|170020541\|ref\|YP_001725495.1\| hypothetical protein EcolC_2537 [Escherichia coli ATCC 8739], gi\|16... gi\|209918317, gi... - gi\|209918317\|ref\|YP_002292401.1\| hypothetical protein ECSE_1126 [Escherichia coli SE11], gi\|20991157... gi\|170080714, gi... - gi\|170080714\|ref\|YP_001730034.1\| lipoprotein [Escherichia coli str. K-12 substr. DH10B], gi\|16988854... YCEB_SHIFL - Uncharacterized lipoprotein YceB OS=Shigella flexneri GN=yceB PE=3 SV=1 EG11117 - lipoprotein, DUF1439 family / DUF1439 family verified lipoprotein, function unknown gi\|30040847, gi\|... - gi\|30062601\|ref\|NP_836772.1\| hypothetical protein S1147 [Shigella flexneri 2a str. 2457T], gi\|300408... EG11117 - lipoprotein, DUF1439 family / DUF1439 family verified lipoprotein, function unknown gi\|157066270, gi... - gi\|75195247\|ref\|ZP_00705317.1\| hypothetical protein EcolH_01001036 [Escherichia coli HS], gi\|1571605... gi\|75210336, gi\|... - gi\|75210336\|ref\|ZP_00710498.1\| hypothetical protein EcolB_01002581 [Escherichia coli B171], gi\|19442... gi\|75228331, gi\|... - gi\|75228331\|ref\|ZP_00714981.1\| hypothetical protein EcolB7_01003341 [Escherichia coli B7A], gi\|19116... YCEB_ECOLI - Putative lipoprotein yceB precursor - Escherichia coli gi\|75235933, gi\|... - gi\|75235933\|ref\|ZP_00720070.1\| hypothetical protein EcolE1_01002447 [Escherichia coli E110019], gi\|1... gi\|191172388, gi... - gi\|75240659\|ref\|ZP_00724576.1\| hypothetical protein EcolF_01002377 [Escherichia coli F11], gi\|191172... gi\|82544471, gi\|... - gi\|82544471\|ref\|YP_408418.1\| hypothetical protein SBO_2001 [Shigella boydii Sb227], gi\|81245882\|gb\|A... gi\|56383363, gi\|... - gi\|56479812\|ref\|NP_706984.2\| hypothetical protein SF1069 [Shigella flexneri 2a str. 301], gi\|5638336...	4.0E-68	[23..208]	[1..186]
gi\|208815069, gi... - gi\|208815069\|ref\|ZP_03256248.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208822692, gi... - gi\|208822692\|ref\|ZP_03263011.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|209160652, gi... - gi\|209399252\|ref\|YP_002269909.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|168789998, gi... - gi\|189370492\|gb\|EDU88908.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168789998... gi\|189375927, gi... - gi\|189375927\|gb\|EDU94343.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168802008... gi\|195935452 - gi\|195935452\|ref\|ZP_03080834.1\| hypothetical protein EscherichcoliO157_03177 [Escherichia coli O157:... gi\|208728607, gi... - gi\|208808806\|ref\|ZP_03251143.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|189365522, gi... - gi\|189365522\|gb\|EDU83938.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876447... gi\|168767722, gi... - gi\|189363287\|gb\|EDU81706.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16876772... gi\|187770449, gi... - gi\|187770449\|gb\|EDU34293.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877390... gi\|168783593, gi... - gi\|188999099\|gb\|EDU68085.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16878359... gi\|209773506, gi... - pir\|\|E85668 hypothetical protein yceB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|188018179, gi... - gi\|188018179\|gb\|EDU56301.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16874716... gi\|254792445, gi... - gi\|254792445\|ref\|YP_003077282.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|168758647, gi... - gi\|189354574\|gb\|EDU72993.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875864... gi\|12514598, gi\|... - gi\|15801180\|ref\|NP_287197.1\| hypothetical protein Z1700 [Escherichia coli O157:H7 EDL933], gi\|125145... gi\|15830695, gi\|... - gi\|15830695\|ref\|NP_309468.1\| hypothetical protein ECs1441 [Escherichia coli O157:H7], gi\|13360905\|db... gi\|15830695, gi\|... - gi\|15830695\|ref\|NP_309468.1\| hypothetical protein ECs1441 [Escherichia coli O157:H7 str. Sakai], gi\|...	6.0E-68	[23..208]	[1..186]
gi\|188489715, gi... - gi\|75513507\|ref\|ZP_00735911.1\| hypothetical protein Ecol5_01002497 [Escherichia coli 53638], gi\|1884...	7.0E-68	[23..208]	[1..186]
gi\|74311625, gi\|... - gi\|74311625\|ref\|YP_310044.1\| hypothetical protein SSON_1083 [Shigella sonnei Ss046], gi\|73855102\|gb\|...	9.0E-68	[23..208]	[1..186]
gi\|75257499, gi\|... - gi\|75257499\|ref\|ZP_00729002.1\| hypothetical protein EcolE2_01002754 [Escherichia coli E22], gi\|19306...	1.0E-67	[23..208]	[1..186]
gi\|157154992, gi... - gi\|75190121\|ref\|ZP_00703388.1\| hypothetical protein EcolE_01003415 [Escherichia coli E24377A], gi\|15...	1.0E-67	[23..208]	[1..186]
gi\|194419287, gi... - gi\|83570490\|ref\|ZP_00921934.1\| COG1080: Phosphoenolpyruvate-protein kinase (PTS system EI component ...	1.0E-67	[23..208]	[1..186]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAGATCCFV SRLGHRQHAK ERHEKVFFAA ALVVSGLLVG CNQLTQYTIS EQEINQALEK  60
   61 RNNFSKDIGL PGIADAHIVL TNLASQIGRE EPNKVTLTGD ARLDMNSLFG SQKATMKLKL 120
  121 KALPVFDKEK GAIYLQEMEV VDATVTPEKM QSVLQTLLPY LNQSLRSYFN QRPAYVLRED 180
  181 SSKGEALAKK LAKGIEVKPG EIVIPFTN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	125.244125
Match:	PF07273.3
Description:	No description for PF07273.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits