YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|225735405, gi...
Organism: Oryza sativa Indica Group
Length: 179 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|225735405, gi....

Description E-value Query
Range
Subject
Range
gi|208609498, gi... - gi|78058612|gb|ABB17667.1| Hd3a [Oryza sativa (indica cultivar-group)], gi|78058610|gb|ABB17666.1| H...
230.0 [0..1] [178..1]

Back

Predicted Domain #1
Region A:
Residues: [1-179]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSGRDRDP LVVGRVVGDV LDAFVRSTNL KVTYGSKTVS NGCELKPSMV THQPRVEVGG  60
   61 NDMRTFYTLV MVDPDAPSPS DPNLREYLHW LVTDIPGTTA ASFGQEVMCY ESPRPTMGIH 120
  121 RLVFVLFQQL GRQTVYAPGW RQNFNTKDFA ELYNLGSPVA AVYFNCQREA GSGGRRVYP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.0
Match: 1wkpA
Description: flowering locus t (ft) from arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle