YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|166962730, gi...
Organism:	Yersinia pestis biovar Orientalis str. MG05-1020
Length:	407 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|166962730, gi....

Description	E-value	Query Range	Subject Range
gi\|77959705, gi\|... - gi\|77959705\|ref\|ZP_00823722.1\| COG1015: Phosphopentomutase [Yersinia bercovieri ATCC 43970], gi\|2387...	0.0	[1..407]	[1..407]
gi\|77973608, gi\|... - gi\|77973608\|ref\|ZP_00829154.1\| COG1015: Phosphopentomutase [Yersinia frederiksenii ATCC 33641], gi\|2...	0.0	[1..407]	[6..412]
gi\|117674938, gi... - gi\|77631569\|ref\|ZP_00794155.1\| COG1015: Phosphopentomutase [Yersinia pseudotuberculosis IP 31758], g...	0.0	[1..407]	[23..429]
gi\|89104402 - gi\|89104402\|ref\|ZP_01176946.1\| COG1015: Phosphopentomutase [Yersinia pestis biovar Orientalis str. I... gi\|21960723, gi\|... - gi\|22127613\|ref\|NP_671036.1\| phosphopentomutase [Yersinia pestis KIM], gi\|21960723\|gb\|AAM87287.1\|AE0... gi\|45438344, gi\|... - gi\|45443475\|ref\|NP_995014.1\| phosphopentomutase [Yersinia pestis biovar Microtus str. 91001], gi\|454...	0.0	[1..407]	[23..429]
DEOB_YERP3 - Phosphopentomutase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=deoB PE=3 SV=1 DEOB_YERPS - Phosphopentomutase OS=Yersinia pseudotuberculosis GN=deoB PE=3 SV=1 DEOB_YERPS - Phosphopentomutase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=deoB PE=3 SV=1 DEOB_YERPB - Phosphopentomutase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=deoB PE=3 SV=1 DEOB_YERPY - Phosphopentomutase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=deoB PE=3 SV=1	0.0	[1..407]	[1..407]
gi\|77635643 - gi\|77635643\|ref\|ZP_00797725.1\| COG1015: Phosphopentomutase [Yersinia pestis Angola]	0.0	[1..407]	[23..429]
gi\|77977212, gi\|... - gi\|77977212\|ref\|ZP_00832667.1\| COG1015: Phosphopentomutase [Yersinia intermedia ATCC 29909], gi\|2387...	0.0	[1..406]	[20..425]
gi\|77960325, gi\|... - gi\|77960325\|ref\|ZP_00824202.1\| COG1015: Phosphopentomutase [Yersinia mollaretii ATCC 43969], gi\|2387...	0.0	[1..406]	[1..406]
DEOB_PHOLL - Phosphopentomutase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 / TT0... DEOB_PHOLL - Phosphopentomutase OS=Photorhabdus luminescens subsp. laumondii GN=deoB PE=3 SV=1	0.0	[1..407]	[1..407]
DEOB_SALPC - Phosphopentomutase OS=Salmonella paratyphi C (strain RKS4594) GN=deoB PE=3 SV=1 DEOB_SALCH - Phosphopentomutase OS=Salmonella choleraesuis GN=deoB PE=3 SV=1 DEOB_SALCH - Phosphopentomutase OS=Salmonella choleraesuis GN=deoB PE=3 SV=1 DEOB_SALCH - Phosphopentomutase OS=Salmonella choleraesuis (strain SC-B67) GN=deoB PE=3 SV=1	0.0	[1..407]	[1..407]

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Predicted Domain #1

Region A:
Residues: [1-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTFIMVLD SFGIGASADA KKFGDEGADT LGHIAEACAR GEANVGRSGP LTLPNLSRLG  60
   61 LGKAAEESTG TFPVGLDKNA DIIGAYGYAS ELSSGKDTPS GHWEIAGVPV LFDWGYFSDV 120
  121 ENSFPQELLD KLVKRANLPG YLGNCHSSGT VILDQLGEEH MKTGKPIFYT SADSVFQIAC 180
  181 HEETFGLDRL YELCEIAREE LTDGGYNIGR VIARPFIGDK PGHFQRTGNR HDLAVEPPAP 240
  241 TMLKKLVDEK GGEVVSIGKI ADIYAQVGIT QKVKATGLDA LFDATIEEMK KAGDNTIVFT 300
  301 NFVDFDSSYG HRRDVAGYAA ALELFDRRLP ELMALIKEDD ILILTADHGC DPTWPGTDHT 360
  361 REHIPVLVYG PKVKPGSLGH RETFADIGQT VAAYFGLSPM DYGKNML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	129.0
Match:	2i09A
Description:	No description for 2i09A was found.

Predicted functions:

Term	Confidence	Notes
hydrolase activity, acting on ester bonds	1.7864683378766	bayes_pls_golite062009
hydrolase activity	1.70198188398642	bayes_pls_golite062009
catalytic activity	1.00294942392567	bayes_pls_golite062009
binding	0.177105413286598	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: