YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194417846, gi...
Organism:	Shigella dysenteriae 1012
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194417846, gi....

Description	E-value	Query Range	Subject Range
gi\|114538925, gi... - gi\|114706079\|ref\|ZP_01438982.1\| methionine sulfoxide reductase A [Fulvimarina pelagi HTCC2506], gi\|1...	331.0	[0..1]	[212..4]
gi\|91075350, gi\|... - gi\|91213776\|ref\|YP_543762.1\| methionine sulfoxide reductase A [Escherichia coli UTI89], gi\|91075350\|... gi\|226901808, gi... - gi\|237703896\|ref\|ZP_04534377.1\| methionine sulfoxide reductase A [Escherichia sp. 3_2_53FAA], gi\|226... gi\|254037239, gi... - gi\|254037239\|ref\|ZP_04871316.1\| methionine sulfoxide reductase A [Escherichia sp. 1_1_43], gi\|226840...	329.0	[0..1]	[212..23]
gi\|115515693, gi... - gi\|117626569\|ref\|YP_859892.1\| methionine sulfoxide reductase A [Escherichia coli APEC O1], gi\|115515...	328.0	[0..1]	[212..10]
gi\|186684368, gi... - gi\|23126307\|ref\|ZP_00108208.1\| COG0225: Peptide methionine sulfoxide reductase [Nostoc punctiforme P...	327.0	[0..1]	[209..1]
gi\|83586748 - gi\|83586748\|ref\|ZP_00925380.1\| COG0225: Peptide methionine sulfoxide reductase [Escherichia coli 101... gi\|83569410 - gi\|83569410\|ref\|ZP_00920864.1\| COG0225: Peptide methionine sulfoxide reductase [Shigella dysenteriae... gi\|75515460 - gi\|75515460\|ref\|ZP_00737617.1\| COG0225: Peptide methionine sulfoxide reductase [Escherichia coli 536... gi\|75258323 - gi\|75258323\|ref\|ZP_00729754.1\| COG0225: Peptide methionine sulfoxide reductase [Escherichia coli E22... gi\|75235470 - gi\|75235470\|ref\|ZP_00719678.1\| COG0225: Peptide methionine sulfoxide reductase [Escherichia coli E11... gi\|75229594 - gi\|75229594\|ref\|ZP_00716133.1\| COG0225: Peptide methionine sulfoxide reductase [Escherichia coli B7A... gi\|75212224 - gi\|75212224\|ref\|ZP_00712264.1\| COG0225: Peptide methionine sulfoxide reductase [Escherichia coli B17... gi\|75198072 - gi\|75198072\|ref\|ZP_00708142.1\| COG0225: Peptide methionine sulfoxide reductase [Escherichia coli HS] gi\|75188934 - gi\|75188934\|ref\|ZP_00702201.1\| COG0225: Peptide methionine sulfoxide reductase [Escherichia coli E24...	327.0	[0..1]	[212..10]
gi\|75242389 - gi\|75242389\|ref\|ZP_00726151.1\| COG0225: Peptide methionine sulfoxide reductase [Escherichia coli F11...	327.0	[0..1]	[212..10]
gi\|75179323 - gi\|75179323\|ref\|ZP_00699327.1\| COG0225: Peptide methionine sulfoxide reductase [Shigella boydii BS51...	326.0	[0..1]	[212..10]
gi\|191170841, gi... - gi\|191170841\|ref\|ZP_03032393.1\| methionine-S-sulfoxide reductase [Escherichia coli F11], gi\|19090906... MSRA_ECOL5 - Peptide methionine sulfoxide reductase MsrA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ms...	326.0	[0..1]	[212..1]
gi\|50745232 - gi\|50745232\|ref\|XP_420035.1\| PREDICTED: similar to peptide methionine sulfoxide reductase [Gallus ga...	326.0	[0..7]	[209..23]
gi\|22294607, gi\|... - gi\|22298428\|ref\|NP_681675.1\| methionine sulfoxide reductase A [Thermosynechococcus elongatus BP-1], ...	325.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFDKKHLV SPADALPGRN TPMPVATLHA VNGHSMTNVP DGMEIAIFAM GCFWGVERLF  60
   61 WQLPGVYSTA AGYTGGYTPN PTYREVCSGD TGHAEAVRIV YDPSVISYEQ LLQVFWENHD 120
  121 PAQGMRQGND HGTQYRSAIY PLTPEQDAAA RASLERFQAA MLAADDDRHI TTEIANATPF 180
  181 YYAEDDHQQY LHKNPYGYCG IGGIGVCLPP EA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	89.522879
Match:	2gt3A
Description:	No description for 2gt3A was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	7.33214277590189	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	7.05871760837663	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	4.45221508174489	bayes_pls_golite062009
catalytic activity	2.02168745464921	bayes_pls_golite062009
binding	1.21670366786992	bayes_pls_golite062009
protein binding	0.0950083680136139	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: