YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221322050
Organism:	Bacillus subtilis subsp. subtilis str. SMY
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221322050.

Description	E-value	Query Range	Subject Range
gi\|89151551, gi\|... - gi\|89200480\|ref\|ZP_01179233.1\| hypothetical protein Bcer98DRAFT_3080 [Bacillus cereus subsp. cytotox...	126.0	[0..10]	[75..31]
gi\|52347419, gi\|... - gi\|52784917\|ref\|YP_090746.1\| CotJA [Bacillus licheniformis ATCC 14580], gi\|52347419\|gb\|AAU40053.1\| C...	118.0	[0..5]	[75..6]
gi\|89085258, gi\|... - gi\|89100024\|ref\|ZP_01172894.1\| spore coat-associated protein JA [Bacillus sp. NRRL B-14911], gi\|8908...	114.0	[0..7]	[75..20]
gi\|218231487, gi... - gi\|218231487\|ref\|YP_002365594.1\| cotJA protein [Bacillus cereus B4264], gi\|218159444\|gb\|ACK59436.1\| ... gi\|225862781, gi... - gi\|225862781\|ref\|YP_002748159.1\| cotJA protein [Bacillus cereus 03BB102], gi\|225786357\|gb\|ACO26574.1... gi\|218541148, gi... - gi\|218895851\|ref\|YP_002444262.1\| cotJA protein [Bacillus cereus G9842], gi\|218541148\|gb\|ACK93542.1\| ... gi\|196022432, gi... - gi\|196046720\|ref\|ZP_03113943.1\| cotJA protein [Bacillus cereus 03BB108], gi\|196022432\|gb\|EDX61116.1\|... gi\|206967946, gi... - gi\|206967946\|ref\|ZP_03228902.1\| cotJA protein [Bacillus cereus AH1134], gi\|206736866\|gb\|EDZ54013.1\| ... gi\|228782191, gi... - gi\|228977547\|ref\|ZP_04137939.1\| hypothetical protein bthur0002_7610 [Bacillus thuringiensis Bt407], ... gi\|74491965, gi\|... - gi\|75760537\|ref\|ZP_00740572.1\| CotJA protein [Bacillus thuringiensis serovar israelensis ATCC 35646]... gi\|118476469, gi... - gi\|118476469\|ref\|YP_893620.1\| spore coat-associated protein JA [Bacillus thuringiensis str. Al Hakam...	110.0	[0..10]	[75..5]
gi\|47564742, gi\|... - gi\|47564742\|ref\|ZP_00235786.1\| CotJA protein-related protein [Bacillus cereus G9241], gi\|47558115\|gb... gi\|42735891, gi\|... - gi\|42779973\|ref\|NP_977220.1\| cotJA protein [Bacillus cereus ATCC 10987], gi\|42735891\|gb\|AAS39828.1\| ...	109.0	[0..10]	[75..1]
gi\|89207728, gi\|... - gi\|89207728\|ref\|ZP_01186261.1\| cotJA protein [Bacillus weihenstephanensis KBAB4], gi\|89154306\|gb\|EAR...	109.0	[0..10]	[75..5]
gi\|167636616, gi... - gi\|167636616\|ref\|ZP_02394908.1\| cotJA protein [Bacillus anthracis str. A0442], gi\|167527948\|gb\|EDR90... gi\|164711087, gi... - gi\|165873176\|ref\|ZP_02217790.1\| cotJA protein [Bacillus anthracis str. A0488], gi\|164711087\|gb\|EDR16... gi\|227816322, gi... - gi\|227816322\|ref\|YP_002816331.1\| cotJA protein [Bacillus anthracis str. CDC 684], gi\|227006077\|gb\|AC... gi\|228846081, gi... - gi\|228913494\|ref\|ZP_04077123.1\| hypothetical protein bthur0012_7340 [Bacillus thuringiensis serovar ... gi\|228919652, gi... - gi\|228919652\|ref\|ZP_04083014.1\| hypothetical protein bthur0011_6760 [Bacillus thuringiensis serovar ... gi\|228833692, gi... - gi\|228925980\|ref\|ZP_04089061.1\| hypothetical protein bthur0010_7030 [Bacillus thuringiensis serovar ... gi\|228932224, gi... - gi\|228932224\|ref\|ZP_04095109.1\| hypothetical protein bthur0009_7030 [Bacillus thuringiensis serovar ... gi\|228815008, gi... - gi\|228944548\|ref\|ZP_04106918.1\| hypothetical protein bthur0007_7190 [Bacillus thuringiensis serovar ... gi\|47526094, gi\|... - gi\|47526094\|ref\|YP_017443.1\| spore coat-associated protein JA [Bacillus anthracis str. 'Ames Ancesto... gi\|218902019, gi... - gi\|218902019\|ref\|YP_002449853.1\| cotJA protein [Bacillus cereus AH820], gi\|218539574\|gb\|ACK91972.1\| ... gi\|228983998, gi... - gi\|228983998\|ref\|ZP_04144187.1\| hypothetical protein bthur0001_7110 [Bacillus thuringiensis serovar ... gi\|49183792, gi\|... - gi\|49183792\|ref\|YP_027044.1\| cotJA protein [Bacillus anthracis str. Sterne], gi\|49177719\|gb\|AAT53095... gi\|217958395, gi... - gi\|217958395\|ref\|YP_002336943.1\| cotJA protein [Bacillus cereus AH187], gi\|217062895\|gb\|ACJ77145.1\| ... gi\|229120441, gi... - gi\|229120441\|ref\|ZP_04249688.1\| hypothetical protein bcere0016_7530 [Bacillus cereus 95/8201], gi\|22... gi\|65318226, gi\|... - gi\|65318226\|ref\|ZP_00391185.1\| hypothetical protein Bant_01001462 [Bacillus anthracis str. A2012], r... gi\|228645840, gi... - gi\|229137614\|ref\|ZP_04266220.1\| hypothetical protein bcere0013_7440 [Bacillus cereus BDRD-ST26], gi\|... gi\|30254395, gi\|... - gi\|30260946\|ref\|NP_843323.1\| cotJA protein [Bacillus anthracis str. Ames], gi\|30254395\|gb\|AAP24809.1... gi\|221238614, gi... - gi\|222094556\|ref\|YP_002528616.1\| cotJA protein [Bacillus cereus Q1], gi\|221238614\|gb\|ACM11324.1\| cot... gi\|229267378, gi... - gi\|229602970\|ref\|YP_002865389.1\| cotJA protein [Bacillus anthracis str. A0248], gi\|229267378\|gb\|ACQ4... gi\|254682996 - gi\|254682996\|ref\|ZP_05146857.1\| cotJA protein [Bacillus anthracis str. CNEVA-9066] gi\|254725784 - gi\|254725784\|ref\|ZP_05187566.1\| cotJA protein [Bacillus anthracis str. A1055] gi\|254735112 - gi\|254735112\|ref\|ZP_05192823.1\| cotJA protein [Bacillus anthracis str. Western North America USA6153... gi\|254739943 - gi\|254739943\|ref\|ZP_05197635.1\| cotJA protein [Bacillus anthracis str. Kruger B] gi\|170666440, gi... - gi\|170689596\|ref\|ZP_02880780.1\| cotJA protein [Bacillus anthracis str. A0465], gi\|170666440\|gb\|EDT17... gi\|254753281 - gi\|254753281\|ref\|ZP_05205317.1\| cotJA protein [Bacillus anthracis str. Vollum] gi\|167510122, gi... - gi\|167641921\|ref\|ZP_02400158.1\| cotJA protein [Bacillus anthracis str. A0193], gi\|167510122\|gb\|EDR85... gi\|254757195 - gi\|254757195\|ref\|ZP_05209223.1\| cotJA protein [Bacillus anthracis str. Australia 94] gi\|177655804, gi... - gi\|177655804\|ref\|ZP_02937046.1\| cotJA protein [Bacillus anthracis str. A0174], gi\|172079967\|gb\|EDT65... gi\|170709307, gi... - gi\|170709307\|ref\|ZP_02899724.1\| cotJA protein [Bacillus anthracis str. A0389], gi\|170125775\|gb\|EDS94... gi\|195992204, gi... - gi\|196035140\|ref\|ZP_03102546.1\| cotJA protein [Bacillus cereus W], gi\|195992204\|gb\|EDX56166.1\| cotJA... gi\|190568783, gi... - gi\|190568783\|ref\|ZP_03021686.1\| cotJA protein [Bacillus anthracis Tsiankovskii-I], gi\|190560020\|gb\|E... gi\|49332458, gi\|... - gi\|49480902\|ref\|YP_035060.1\| cotJA protein [Bacillus thuringiensis serovar konkukian str. 97-27], gi... gi\|206977233, gi... - gi\|206977233\|ref\|ZP_03238131.1\| cotJA protein [Bacillus cereus H3081.97], gi\|206744549\|gb\|EDZ55958.1... gi\|52144520, gi\|... - gi\|52144520\|ref\|YP_082307.1\| spore coat-associated protein JA [Bacillus cereus E33L], gi\|51977989\|gb... gi\|196037365, gi... - gi\|196037365\|ref\|ZP_03104676.1\| cotJA protein [Bacillus cereus NVH0597-99], gi\|196031607\|gb\|EDX70203...	108.0	[0..10]	[75..5]
gi\|30018982, gi\|... - gi\|30018982\|ref\|NP_830613.1\| CotJA protein [Bacillus cereus ATCC 14579], gi\|29894524\|gb\|AAP07814.1\| ... gi\|229042674, gi... - gi\|229042674\|ref\|ZP_04190414.1\| hypothetical protein bcere0027_7360 [Bacillus cereus AH676], gi\|2287... gi\|228639884, gi... - gi\|229143528\|ref\|ZP_04271953.1\| hypothetical protein bcere0012_6960 [Bacillus cereus BDRD-ST24], gi\|... gi\|229126235, gi... - gi\|229126235\|ref\|ZP_04255253.1\| hypothetical protein bcere0015_6950 [Bacillus cereus BDRD-Cer4], gi\|... gi\|229108408, gi... - gi\|229108408\|ref\|ZP_04238025.1\| hypothetical protein bcere0018_6940 [Bacillus cereus Rock1-15], gi\|2...	108.0	[0..10]	[75..5]

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Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDMQPFTPV KSYTPFHSRF DPCPPIGKKY YRTPPNLYMT FQPEHMEQFS PMEALRKGTL  60
   61 WKDLYDFYEN PYRGGDAHGK KG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits