YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|206709124, gi...
Organism:	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|206709124, gi....

Description	E-value	Query Range	Subject Range
gi\|505362 - gi\|505362\|dbj\|BAA04979.1\| FlgN protein [Salmonella enterica subsp. enterica serovar Typhimurium] gi\|505362\|dbj\|BA... - FlgN protein [Salmonella typhimurium]	1.0E-33	[1..140]	[1..140]
gi\|157154753, gi... - gi\|75190128\|ref\|ZP_00703395.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	4.0E-30	[1..140]	[1..138]
gi\|1651525, gi\|8... - gi\|89107916\|ref\|AP_001696.1\| export chaperone for FlgK and FlgL [Escherichia coli str. K-12 substr. ... EG12665 - export chaperone for FlgK and FlgL / Initiation of flagellar filament assembly gi\|169888556, gi... - gi\|170080721\|ref\|YP_001730041.1\| export chaperone for FlgK and FlgL [Escherichia coli str. K-12 subs... gi\|238900324, gi... - gi\|238900324\|ref\|YP_002926120.1\| export chaperone for FlgK and FlgL [Escherichia coli BW2952], gi\|23... gi\|251784601, gi... - gi\|251784601\|ref\|YP_002998905.1\| hypothetical protein B21_01074 [Escherichia coli BL21], gi\|24237687... gi\|254287984, gi... - gi\|254287984\|ref\|YP_003053732.1\| export chaperone for FlgK and FlgL [Escherichia coli BL21(DE3)], gi... EG12665 - export chaperone for FlgK and FlgL / Initiation of flagellar filament assembly gi\|253973077, gi... - gi\|254161176\|ref\|YP_003044284.1\| export chaperone for FlgK and FlgL [Escherichia coli B str. REL606]... gi\|194423056, gi... - gi\|83586396\|ref\|ZP_00925030.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... FLGN_ECOLI - Flagella synthesis protein flgN - Escherichia coli gi\|73855109, gi\|... - gi\|74311632\|ref\|YP_310051.1\| protein of flagellar biosynthesis [Shigella sonnei Ss046], gi\|73855109\|...	4.0E-30	[1..140]	[1..138]
gi\|188488083, gi... - gi\|75513514\|ref\|ZP_00735918.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|218553649, gi... - gi\|218553649\|ref\|YP_002386562.1\| export chaperone for FlgK and FlgL [Escherichia coli IAI1], gi\|2183... gi\|75257506, gi\|... - gi\|75257506\|ref\|ZP_00729009.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|193069496, gi... - gi\|75235926\|ref\|ZP_00720063.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|75228338, gi\|... - gi\|75228338\|ref\|ZP_00714988.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|75210343, gi\|... - gi\|75210343\|ref\|ZP_00710505.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|75195254, gi\|... - gi\|75195254\|ref\|ZP_00705324.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|187428885, gi... - gi\|75175803\|ref\|ZP_00695998.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	5.0E-30	[1..140]	[1..138]
gi\|194432360, gi... - gi\|83570483\|ref\|ZP_00921927.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ...	1.0E-29	[1..140]	[1..138]
FLGN_YEREN - Flagella synthesis protein flgN - Yersinia enterocolitica	1.0E-29	[1..140]	[3..147]
gi\|81245875, gi\|... - gi\|82544464\|ref\|YP_408411.1\| protein of flagellar biosynthesis [Shigella boydii Sb227], gi\|81245875\|...	2.0E-29	[1..140]	[1..138]
gi\|227886572, gi... - gi\|227886572\|ref\|ZP_04004377.1\| flagella synthesis protein FlgN [Escherichia coli 83972], gi\|2278367... gi\|26247210, gi\|... - gi\|26247210\|ref\|NP_753250.1\| flagella synthesis protein FlgN [Escherichia coli CFT073], gi\|26107611\|... gi\|170683502, gi... - gi\|170683502\|ref\|YP_001744111.1\| flagella synthesis protein FlgN [Escherichia coli SMS-3-5], gi\|1705... gi\|218700427, gi... - gi\|218700427\|ref\|YP_002408056.1\| export chaperone for FlgK and FlgL [Escherichia coli IAI39], gi\|218...	2.0E-29	[1..140]	[1..138]
gi\|218364721, gi... - gi\|218557952\|ref\|YP_002390865.1\| export chaperone for FlgK and FlgL [Escherichia coli S88], gi\|21836... gi\|75240666, gi\|... - gi\|75240666\|ref\|ZP_00724583.1\| COG3418: Flagellar biosynthesis/type III secretory pathway chaperone ... gi\|218426587, gi... - gi\|218689023\|ref\|YP_002397235.1\| export chaperone for FlgK and FlgL [Escherichia coli ED1a], gi\|2184... gi\|215264351, gi... - gi\|215486279\|ref\|YP_002328710.1\| export chaperone for FlgK and FlgL [Escherichia coli O127:H6 str. E... gi\|115512380, gi... - gi\|117623256\|ref\|YP_852169.1\| flagella synthesis protein FlgN [Escherichia coli APEC O1], gi\|1155123... gi\|91071796, gi\|... - gi\|91210222\|ref\|YP_540208.1\| flagella synthesis protein FlgN [Escherichia coli UTI89], gi\|91071796\|g... gi\|110342838, gi... - gi\|110641246\|ref\|YP_668976.1\| flagella synthesis protein FlgN [Escherichia coli 536], gi\|110342838\|g... gi\|237706944, gi... - gi\|237706944\|ref\|ZP_04537425.1\| flagella synthesis protein FlgN [Escherichia sp. 3_2_53FAA], gi\|2268...	3.0E-29	[1..140]	[1..138]
gi\|24051367, gi\|... - gi\|24112481\|ref\|NP_706991.1\| flagella synthesis protein FlgN [Shigella flexneri 2a str. 301], gi\|240... gi\|30062608, gi\|... - gi\|30062608\|ref\|NP_836779.1\| flagella synthesis protein FlgN [Shigella flexneri 2a str. 2457T], gi\|3... gi\|110805088, gi... - gi\|110805088\|ref\|YP_688608.1\| flagella synthesis protein FlgN [Shigella flexneri 5 str. 8401], gi\|11...	4.0E-29	[1..140]	[1..138]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRLSEILDQ MTTVLNDLKT VMDAEQQQLS VGQINGSQLQ RITEEKSSLL ATLDYLEQQR  60
   61 RLEQNAQRSA NDDIAERWQA ITEKTQHLRD LNQHNGWLLE GQIERNQQAL EVLKPHQEPT 120
  121 LYGADGQTSV SHRGGKKISI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2fupA
Description:	Crystal structure of hypothetical protein PA3352 from Pseudomonas aeruginosa at 1.48 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits