YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213650065
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213650065.

Description	E-value	Query Range	Subject Range
NRDI_ECO8A - Protein NrdI OS=Escherichia coli O8 (strain IAI1) GN=nrdI PE=3 SV=1 gi\|75234109, gi\|... - gi\|75234109\|ref\|ZP_00718520.1\| COG1780: Protein involved in ribonucleotide reduction [Escherichia co... NRDI_ECO24 - Protein NrdI OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nrdI PE=3 SV=1 NRDI_ECO55 - Protein NrdI OS=Escherichia coli (strain 55989 / EAEC) GN=nrdI PE=3 SV=1	1.0E-37	[1..136]	[1..136]
gi\|168755419, gi... - gi\|189357375\|gb\|EDU75794.1\| nrdI protein [Escherichia coli O157:H7 str. EC4401], gi\|168755419\|ref\|ZP... gi\|188014999, gi... - gi\|188014999\|gb\|EDU53121.1\| nrdI protein [Escherichia coli O157:H7 str. EC4113], gi\|168750917\|ref\|ZP... gi\|189362152, gi... - gi\|189362152\|gb\|EDU80571.1\| nrdI protein [Escherichia coli O157:H7 str. EC4486], gi\|168768765\|ref\|ZP... gi\|168762469, gi... - gi\|189367312\|gb\|EDU85728.1\| nrdI protein [Escherichia coli O157:H7 str. EC4501], gi\|168762469\|ref\|ZP... gi\|189003328, gi... - gi\|189003328\|gb\|EDU72314.1\| nrdI protein [Escherichia coli O157:H7 str. EC4076], gi\|168778656\|ref\|ZP... gi\|187769580, gi... - gi\|187769580\|gb\|EDU33424.1\| nrdI protein [Escherichia coli O157:H7 str. EC4196], gi\|168774794\|ref\|ZP... NRDI_ECOL6 - Protein nrdI OS=Escherichia coli O6 GN=nrdI PE=3 SV=1 gi\|15832791, gi\|... - gi\|15832791\|ref\|NP_311564.1\| ribonucleotide reductase stimulatory protein [Escherichia coli O157:H7 ... NRDI_ECOL5 - Protein NrdI OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nrdI PE=3 SV=1 NRDI_SHIF8 - Protein NrdI OS=Shigella flexneri serotype 5b (strain 8401) GN=nrdI PE=3 SV=1 gi\|24053091, gi\|... - gi\|24113978\|ref\|NP_708488.1\| ribonucleotide reductase stimulatory protein [Shigella flexneri 2a str.... NRDI_SHIFL - Protein NrdI OS=Shigella flexneri GN=nrdI PE=3 SV=1 gi\|30042297, gi\|... - gi\|30064041\|ref\|NP_838212.1\| ribonucleotide reductase stimulatory protein [Shigella flexneri 2a str.... NRDI_ECOL6 - Protein NrdI OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=nrdI PE=3 SV=1 EG13287 - NrdEF cluster assembly flavodoxin / Flavodoxin required for NrdEF cluster assembly NRDI_ECO57 - Protein NrdI OS=Escherichia coli O157:H7 GN=nrdI PE=3 SV=1 gi\|227888208, gi... - gi\|227888208\|ref\|ZP_04006013.1\| ribonucleotide reductase stimulatory protein [Escherichia coli 83972... NRDI_ECOBW - Protein NrdI OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=nrdI PE=3 SV=1 gi\|242378236, gi... - gi\|251785963\|ref\|YP_003000267.1\| hypothetical protein B21_02494 [Escherichia coli BL21], gi\|24237823... gi\|253323509, gi... - gi\|254289372\|ref\|YP_003055120.1\| hypothetical protein ECD_02530 [Escherichia coli BL21(DE3)], gi\|253... gi\|254037716, gi... - gi\|254037716\|ref\|ZP_04871774.1\| hypothetical protein ESCG_00048 [Escherichia sp. 1_1_43], gi\|2268393... gi\|253974512, gi... - gi\|254162611\|ref\|YP_003045719.1\| hypothetical protein ECB_02530 [Escherichia coli B str. REL606], gi... gi\|254594021, gi... - gi\|254794621\|ref\|YP_003079458.1\| hypothetical protein ECSP_3622 [Escherichia coli O157:H7 str. TW143... NRDI_SHIB3 - Protein NrdI OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=nrdI PE=3 SV=1 NRDI_ECOHS - Protein NrdI OS=Escherichia coli O9:H4 (strain HS) GN=nrdI PE=3 SV=1 gi\|194427821, gi... - gi\|75210879\|ref\|ZP_00711003.1\| COG1780: Protein involved in ribonucleotide reduction [Escherichia co... gi\|191167081, gi... - gi\|75229755\|ref\|ZP_00716285.1\| COG1780: Protein involved in ribonucleotide reduction [Escherichia co... gi\|190908273, gi... - gi\|75241623\|ref\|ZP_00725460.1\| COG1780: Protein involved in ribonucleotide reduction [Escherichia co... gi\|192926407, gi... - gi\|75255963\|ref\|ZP_00727687.1\| COG1780: Protein involved in ribonucleotide reduction [Escherichia co... gi\|188493964, gi... - gi\|75513245\|ref\|ZP_00735687.1\| COG1780: Protein involved in ribonucleotide reduction [Escherichia co... gi\|85675519, gi\|... - gi\|89109467\|ref\|AP_003247.1\| protein that stimulates ribonucleotide reduction [Escherichia coli str.... gi\|194433063, gi... - gi\|83569964\|ref\|ZP_00921412.1\| COG1780: Protein involved in ribonucleotide reduction [Shigella dysen... gi\|194439455, gi... - gi\|83585159\|ref\|ZP_00923810.1\| COG1780: Protein involved in ribonucleotide reduction [Escherichia co... NRDI_ECOLI - Protein nrdI - Escherichia coli gi\|12517113, gi\|... - gi\|15803194\|ref\|NP_289226.1\| ribonucleotide reductase stimulatory protein [Escherichia coli O157:H7 ... NRDI_ECOSE - Protein NrdI OS=Escherichia coli (strain SE11) GN=nrdI PE=3 SV=1 NRDI_ECO5E - Protein NrdI OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=nrdI PE=3 SV=1 NRDI_ESCF3 - Protein NrdI OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=nrdI PE=3 SV... gi\|217319183, gi... - gi\|217326816\|ref\|ZP_03442899.1\| nrdI protein [Escherichia coli O157:H7 str. TW14588], gi\|217319183\|g... NRDI_ECO81 - Protein NrdI OS=Escherichia coli O81 (strain ED1a) GN=nrdI PE=3 SV=1 NRDI_ECOLC - Protein NrdI OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nrdI PE=3 SV=1 EG13287 - NrdEF cluster assembly flavodoxin / Flavodoxin required for NrdEF cluster assembly gi\|168800559, gi... - gi\|189377152\|gb\|EDU95568.1\| nrdI protein [Escherichia coli O157:H7 str. EC508], gi\|168800559\|ref\|ZP_... gi\|168789580, gi... - gi\|189370884\|gb\|EDU89300.1\| nrdI protein [Escherichia coli O157:H7 str. EC869], gi\|168789580\|ref\|ZP_... NRDI_ECOSM - Protein NrdI OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nrdI PE=3 SV=1 NRDI_ECODH - Protein NrdI OS=Escherichia coli (strain K12 / DH10B) GN=nrdI PE=3 SV=1 gi\|208808937, gi... - gi\|208808937\|ref\|ZP_03251274.1\| nrdI protein [Escherichia coli O157:H7 str. EC4206], gi\|208728738\|gb... gi\|195938428 - gi\|195938428\|ref\|ZP_03083810.1\| ribonucleotide reductase stimulatory protein [Escherichia coli O157:... gi\|208741445, gi... - gi\|208821322\|ref\|ZP_03261642.1\| nrdI protein [Escherichia coli O157:H7 str. EC4042], gi\|208741445\|gb... gi\|208735566, gi... - gi\|208814289\|ref\|ZP_03255618.1\| nrdI protein [Escherichia coli O157:H7 str. EC4045], gi\|208735566\|gb... gi\|124528046, gi... - gi\|124528046\|ref\|ZP_01699399.1\| NrdI protein [Escherichia coli B], gi\|124500938\|gb\|EAY48406.1\| NrdI ...	1.0E-37	[1..136]	[1..136]
NRDI_SHIDS - Protein NrdI OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nrdI PE=3 SV=1	2.0E-37	[1..136]	[1..136]
NRDI_SHIBS - Protein NrdI OS=Shigella boydii serotype 4 (strain Sb227) GN=nrdI PE=3 SV=1	3.0E-37	[1..136]	[1..136]
NRDI_ECOUT - Protein NrdI OS=Escherichia coli (strain UTI89 / UPEC) GN=nrdI PE=3 SV=1 NRDI_ECO45 - Protein NrdI OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nrdI PE=3 SV=1 gi\|226899744, gi... - gi\|237706704\|ref\|ZP_04537185.1\| adenine DNA glycosylase [Escherichia sp. 3_2_53FAA], gi\|226899744\|gb... NRDI_ECOK1 - Protein NrdI OS=Escherichia coli O1:K1 / APEC GN=nrdI PE=3 SV=1	3.0E-37	[1..136]	[1..136]
NRDI_SALTY - Protein nrdI OS=Salmonella typhimurium GN=nrdI PE=3 SV=1 NRDI_SALCH - Protein nrdI OS=Salmonella choleraesuis GN=nrdI PE=3 SV=1 gi\|167992527, gi... - gi\|205329288\|gb\|EDZ16052.1\| NrdI protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- s... gi\|205340786, gi... - gi\|205340786\|gb\|EDZ27550.1\| NrdI protein [Salmonella enterica subsp. enterica serovar Weltevreden st... NRDI_SALA4 - Protein NrdI OS=Salmonella agona (strain SL483) GN=nrdI PE=3 SV=1 NRDI_SALCH - Protein NrdI OS=Salmonella choleraesuis (strain SC-B67) GN=nrdI PE=3 SV=1 NRDI_SALPC - Protein NrdI OS=Salmonella paratyphi C (strain RKS4594) GN=nrdI PE=3 SV=1 NRDI_SALCH - Protein nrdI OS=Salmonella choleraesuis GN=nrdI PE=3 SV=1 gi\|205322694, gi... - gi\|205322694\|gb\|EDZ10533.1\| NrdI protein [Salmonella enterica subsp. enterica serovar Saintpaul str.... NRDI_SALTY - Protein nrdI OS=Salmonella typhimurium GN=nrdI PE=3 SV=1 NRDI_SALTY - Protein NrdI OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=nrdI PE=3 SV=1	5.0E-37	[1..136]	[1..136]
NRDI_SALPK - Protein NrdI OS=Salmonella paratyphi A (strain AKU_12601) GN=nrdI PE=3 SV=1 NRDI_SALPA - Protein NrdI OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nrdI PE=3 SV=1 NRDI_SALPA - Protein nrdI OS=Salmonella paratyphi A GN=nrdI PE=3 SV=1	3.0E-36	[1..136]	[1..136]
NRDI_BRUA2 - Protein NrdI OS=Brucella abortus (strain 2308) GN=nrdI PE=3 SV=1 NRDI_BRUSI - Protein NrdI OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=nrdI PE=3 SV=1 NRDI_BRUSU - Protein nrdI OS=Brucella suis GN=nrdI PE=3 SV=1 gi\|225616617, gi... - gi\|225628771\|ref\|ZP_03786805.1\| nrdI protein [Brucella ceti str. Cudo], gi\|225616617\|gb\|EEH13665.1\| ... NRDI_BRUO2 - Protein NrdI OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=nrdI PE=3 SV=1 NRDI_BRUMB - Protein NrdI OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=nrdI PE=3 SV=1 NRDI_BRUA1 - Protein NrdI OS=Brucella abortus (strain S19) GN=nrdI PE=3 SV=1 gi\|254695433 - gi\|254695433\|ref\|ZP_05157261.1\| ribonucleotide reductase stimulatory protein [Brucella abortus bv. 3... gi\|254699597 - gi\|254699597\|ref\|ZP_05161425.1\| ribonucleotide reductase stimulatory protein [Brucella suis bv. 5 st... gi\|237817305, gi... - gi\|237817305\|ref\|ZP_04596297.1\| nrdI protein [Brucella abortus str. 2308 A], gi\|237788118\|gb\|EEP6233... NRDI_BRUME - Protein nrdI OS=Brucella melitensis GN=nrdI PE=3 SV=1 gi\|254691265 - gi\|254691265\|ref\|ZP_05154519.1\| ribonucleotide reductase stimulatory protein [Brucella abortus bv. 6... NRDI_BRUME - Protein NrdI OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=nrdI PE=3 SV... gi\|254711555 - gi\|254711555\|ref\|ZP_05173366.1\| ribonucleotide reductase stimulatory protein [Brucella pinnipedialis... gi\|254712152 - gi\|254712152\|ref\|ZP_05173963.1\| ribonucleotide reductase stimulatory protein [Brucella ceti M644/93/... gi\|254702720 - gi\|254702720\|ref\|ZP_05164548.1\| ribonucleotide reductase stimulatory protein [Brucella suis bv. 3 st... NRDI_BRUSU - Protein NrdI OS=Brucella suis biovar 1 (strain 1330) GN=nrdI PE=3 SV=1 gi\|254706146 - gi\|254706146\|ref\|ZP_05167974.1\| ribonucleotide reductase stimulatory protein [Brucella pinnipedialis... NRDI_BRUAB - Protein NrdI OS=Brucella abortus biovar 1 (strain 9-941) GN=nrdI PE=3 SV=1 NRDI_BRUC2 - Protein NrdI OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=nrdI PE=3 SV=1 gi\|254732499 - gi\|254732499\|ref\|ZP_05191077.1\| ribonucleotide reductase stimulatory protein [Brucella abortus bv. 4... gi\|254715223 - gi\|254715223\|ref\|ZP_05177034.1\| ribonucleotide reductase stimulatory protein [Brucella ceti M13/05/1... gi\|254720034 - gi\|254720034\|ref\|ZP_05181845.1\| ribonucleotide reductase stimulatory protein [Brucella sp. 83/13] NRDI_BRUAB - Protein nrdI OS=Brucella abortus GN=nrdI PE=3 SV=1	7.0E-36	[1..135]	[1..135]
gi\|108780285, gi... - gi\|108808372\|ref\|YP_652288.1\| ribonucleotide reductase stimulatory protein [Yersinia pestis Antiqua]... gi\|45437101, gi\|... - gi\|45442237\|ref\|NP_993776.1\| ribonucleotide reductase stimulatory protein [Yersinia pestis biovar Mi...	6.0E-33	[1..132]	[15..147]
NRDI_YERPY - Protein NrdI OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=nrdI PE=3 SV=1 NRDI_YERPB - Protein NrdI OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=nrdI PE=3 SV=1 NRDI_YERPS - Protein nrdI OS=Yersinia pseudotuberculosis GN=nrdI PE=3 SV=1 gi\|229688232, gi... - gi\|229898684\|ref\|ZP_04513829.1\| protein that stimulates ribonucleotide reduction [Yersinia pestis bi... gi\|229681474, gi... - gi\|229901545\|ref\|ZP_04516667.1\| protein that stimulates ribonucleotide reduction [Yersinia pestis Ne... gi\|167468722 - gi\|167468722\|ref\|ZP_02333426.1\| ribonucleotide reductase stimulatory protein [Yersinia pestis FV-1] NRDI_YERPS - Protein NrdI OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=nrdI PE=3 SV=1 gi\|16122859, gi\|... - gi\|218929727\|ref\|YP_002347602.1\| ribonucleotide reductase stimulatory protein [Yersinia pestis CO92]... NRDI_YERP3 - Protein NrdI OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=nrdI PE=3 SV=1 gi\|149365455, gi... - gi\|149365455\|ref\|ZP_01887490.1\| protein that stimulates ribonucleotide reduction [Yersinia pestis CA... NRDI_YERPE - Protein NrdI OS=Yersinia pestis GN=nrdI PE=3 SV=1 gi\|229838204, gi... - gi\|229838204\|ref\|ZP_04458363.1\| protein that stimulates ribonucleotide reduction [Yersinia pestis bi... gi\|229701605, gi... - gi\|229895450\|ref\|ZP_04510622.1\| protein that stimulates ribonucleotide reduction [Yersinia pestis Pe...	6.0E-33	[1..132]	[1..133]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALVYFSSS SENTHRFMQR LGLPATRIPL NERERIQVDE PYILVVPSYG GGGMAGAVPR  60
   61 QVIRFLNDEH NRARIRGVIA SGNRNFGDAW GCAGDVIAQK CGVPWLYRFE LMGTQRDIDN 120
  121 VRKGVNEFWQ QSPRSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.154902
Match:	1j9zA
Description:	NADPH-cytochrome p450 reductase; NADPH-cytochrome p450 reductase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.646071595570549	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: