YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|205342716, gi...
Organism:	Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|205342716, gi....

Description	E-value	Query Range	Subject Range
gi\|217328611, gi... - gi\|217328611\|ref\|ZP_03444692.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. TW14588], ... gi\|209158701, gi... - gi\|209397301\|ref\|YP_002270883.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4115], ... gi\|208724815, gi... - gi\|208810299\|ref\|ZP_03252175.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4206], g... gi\|195937494 - gi\|195937494\|ref\|ZP_03082876.1\| Slp family outer membrane lipoprotein [Escherichia coli O157:H7 str.... gi\|208740643, gi... - gi\|208820520\|ref\|ZP_03260840.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4042], g... gi\|15831769, gi\|... - gi\|15831769\|ref\|NP_310542.1\| putative outer membrane protein [Escherichia coli O157:H7 str. Sakai], ... gi\|208816570, gi... - gi\|208816570\|ref\|ZP_03257690.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4045], g... gi\|168782238, gi... - gi\|189000260\|gb\|EDU69246.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|187769462, gi... - gi\|187769462\|gb\|EDU33306.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|189376753, gi... - gi\|189376753\|gb\|EDU95169.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|168788219, gi... - gi\|189371973\|gb\|EDU90389.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189355004, gi... - gi\|189355004\|gb\|EDU73423.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|188016282, gi... - gi\|188016282\|gb\|EDU54404.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|209768020, gi... - pir\|\|G85791 probable outer membrane protein Z2849 [imported] - Escherichia coli (strain O157:H7, sub... gi\|168770779, gi... - gi\|189360405\|gb\|EDU78824.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|189365726, gi... - gi\|189365726\|gb\|EDU84142.1\| outer membrane protein Slp [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|15802219, gi\|... - gi\|15802219\|ref\|NP_288242.1\| putative outer membrane protein [Escherichia coli O157:H7 EDL933], gi\|1... gi\|15831769, gi\|... - gi\|15831769\|ref\|NP_310542.1\| putative outer membrane protein [Escherichia coli O157:H7], gi\|13361982... gi\|254592828, gi... - gi\|254793428\|ref\|YP_003078265.1\| predicted lipoprotein [Escherichia coli O157:H7 str. TW14359], gi\|2...	6.0E-78	[1..193]	[1..193]
gi\|187429953, gi... - gi\|75177265\|ref\|ZP_00697354.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Shigella bo...	5.0E-77	[1..193]	[1..193]
gi\|110641923, gi... - gi\|110641923\|ref\|YP_669653.1\| Slp family outer membrane lipoprotein [Escherichia coli 536], gi\|11034... gi\|75241325, gi\|... - gi\|75241325\|ref\|ZP_00725176.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|218699626, gi... - gi\|218699626\|ref\|YP_002407255.1\| putative outer membrane-associated lipoprotein [Escherichia coli IA...	3.0E-70	[1..193]	[1..193]
EG13511 - Slp family lipoprotein, RpoE-regulated / RpoE-regulated Slp family lipoprotein, function unknown gi\|75255567, gi\|... - gi\|75255567\|ref\|ZP_00727354.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... YEAY_ECOLI - Hypothetical lipoprotein yeaY precursor - Escherichia coli gi\|75215167, gi\|... - gi\|75215167\|ref\|ZP_00713612.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|194411944, gi... - gi\|75208738\|ref\|ZP_00709030.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|227837341, gi... - gi\|227885768\|ref\|ZP_04003573.1\| outer membrane protein Slp [Escherichia coli 83972], gi\|227837341\|gb... gi\|75195872, gi\|... - gi\|75195872\|ref\|ZP_00705942.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|237705755, gi... - gi\|237705755\|ref\|ZP_04536236.1\| outer membrane protein Slp [Escherichia sp. 3_2_53FAA], gi\|226900512... gi\|75190836, gi\|... - gi\|75190836\|ref\|ZP_00704103.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|238862620, gi... - gi\|238901020\|ref\|YP_002926816.1\| putative lipoprotein [Escherichia coli BW2952], gi\|238862620\|gb\|ACR... YEAY_ECOL6 - Uncharacterized lipoprotein yeaY OS=Escherichia coli O6 GN=yeaY PE=4 SV=1 YEAY_ECOL6 - Uncharacterized lipoprotein YeaY OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=y... EG13511 - Slp family lipoprotein, RpoE-regulated / RpoE-regulated Slp family lipoprotein, function unknown gi\|188493165, gi... - gi\|75513697\|ref\|ZP_00736073.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|218361146, gi... - gi\|218554378\|ref\|YP_002387291.1\| putative outer membrane-associated lipoprotein [Escherichia coli IA... gi\|170081462, gi... - gi\|170081462\|ref\|YP_001730782.1\| lipoprotein [Escherichia coli str. K-12 substr. DH10B], gi\|16988929... gi\|89108645, gi\|... - gi\|89108645\|ref\|AP_002425.1\| predicted lipoprotein [Escherichia coli str. K-12 substr. W3110], gi\|17... gi\|218432401, gi... - gi\|218705304\|ref\|YP_002412823.1\| putative outer membrane-associated lipoprotein [Escherichia coli UM... gi\|91211021, gi\|... - gi\|91211021\|ref\|YP_541007.1\| putative outer membrane protein [Escherichia coli UTI89], gi\|91072595\|g... gi\|115513090, gi... - gi\|117623966\|ref\|YP_852879.1\| lipoprotein [Escherichia coli APEC O1], gi\|115513090\|gb\|ABJ01165.1\| co... gi\|218365437, gi... - gi\|218558668\|ref\|YP_002391581.1\| putative outer membrane-associated lipoprotein [Escherichia coli S8... gi\|110614949, gi... - gi\|110805401\|ref\|YP_688921.1\| putative outer membrane protein [Shigella flexneri 5 str. 8401], gi\|11...	9.0E-70	[1..193]	[1..193]
gi\|75227932, gi\|... - gi\|75227932\|ref\|ZP_00714632.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia... gi\|209912430, gi... - gi\|209919171\|ref\|YP_002293255.1\| hypothetical protein ECSE_1980 [Escherichia coli SE11], gi\|20991243...	2.0E-69	[1..193]	[1..193]
gi\|81245202, gi\|... - gi\|82543791\|ref\|YP_407738.1\| putative outer membrane protein [Shigella boydii Sb227], gi\|81245202\|gb...	2.0E-69	[1..193]	[1..193]
gi\|81241120, gi\|... - gi\|82776972\|ref\|YP_403321.1\| putative outer membrane protein [Shigella dysenteriae Sd197], gi\|812411...	3.0E-69	[1..193]	[1..193]
gi\|30041189, gi\|... - gi\|30062940\|ref\|NP_837111.1\| putative outer membrane protein [Shigella flexneri 2a str. 2457T], gi\|3... gi\|24112806, gi\|... - gi\|24112806\|ref\|NP_707316.1\| putative outer membrane protein [Shigella flexneri 2a str. 301], gi\|240...	3.0E-69	[1..193]	[1..193]
gi\|242377527, gi... - gi\|251785254\|ref\|YP_002999558.1\| hypothetical protein B21_01764 [Escherichia coli BL21], gi\|24237752... gi\|254161865, gi... - gi\|254161865\|ref\|YP_003044973.1\| predicted lipoprotein [Escherichia coli B str. REL606], gi\|25397376... gi\|254288653, gi... - gi\|254288653\|ref\|YP_003054401.1\| predicted lipoprotein [Escherichia coli BL21(DE3)], gi\|253977960\|gb... gi\|83584991, gi\|... - gi\|83584991\|ref\|ZP_00923646.1\| COG3065: Starvation-inducible outer membrane lipoprotein [Escherichia...	3.0E-69	[1..193]	[1..193]
gi\|74311882, gi\|... - gi\|74311882\|ref\|YP_310301.1\| putative outer membrane protein [Shigella sonnei Ss046], gi\|73855359\|gb...	1.0E-68	[1..193]	[1..193]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVQKRLIKG ALACAFALML SGCVTIPDAI KGSSPTPQQD LVRVMNAPQL YIGQEARFGG  60
   61 KVVAVQNQQG KTRLEIATVP LDSGARPVLG EASRGRIFAD VNGFLDPVDF RGQLVTVVGP 120
  121 ITGTVDGKIG NTPYKFMLMQ ATGYKRWHLV QQVVMPPQPI DPWFYGGRAW PYGYGGWGWY 180
  181 NPGPAEVQTI VTE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.971
Match:	2f2fA
Description:	No description for 2f2fA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits