YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213427470
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E02-1180
Length:	460 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213427470.

Description	E-value	Query Range	Subject Range
gi\|158430155, gi... - gi\|33329387\|gb\|AAQ10090.1\| ATP synthase subunit beta [Bacillus sp. TA2.A1], gi\|158430155\|pdb\|2QE7\|F ...	0.0	[1..460]	[1..462]
ATPB_MOOTA - ATP synthase subunit beta OS=Moorella thermoacetica (strain ATCC 39073) GN=atpD PE=1 SV=1	0.0	[1..460]	[1..461]
ATPB_BACCN - ATP synthase subunit beta OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	0.0	[1..460]	[1..462]
ATPB_ECO57 - ATP synthase subunit beta OS=Escherichia coli O157:H7 GN=atpD PE=3 SV=2 ATPB_SHIBS - ATP synthase subunit beta OS=Shigella boydii serotype 4 (strain Sb227) GN=atpD PE=3 SV=1 EG10101 - F1 sector of membrane-bound ATP synthase, beta subunit / ATP synthase subunit beta, membrane-bound, ... gi\|85676306, gi\|... - gi\|89110275\|ref\|AP_004055.1\| F1 sector of membrane-bound ATP synthase, beta subunit [Escherichia col... gi\|12518589, gi\|... - gi\|15804332\|ref\|NP_290371.1\| F0F1 ATP synthase subunit beta [Escherichia coli O157:H7 EDL933], gi\|12... ATPB_SHISS - ATP synthase subunit beta OS=Shigella sonnei (strain Ss046) GN=atpD PE=3 SV=1 ATPB_ECOL6 - ATP synthase subunit beta OS=Escherichia coli O6 GN=atpD PE=3 SV=2 gi\|194428061, gi... - gi\|75210658\|ref\|ZP_00710799.1\| COG0055: F0F1-type ATP synthase, beta subunit [Escherichia coli B171]... gi\|75230995, gi\|... - gi\|75230995\|ref\|ZP_00717430.1\| COG0055: F0F1-type ATP synthase, beta subunit [Escherichia coli B7A],... ATPB_SHIB3 - ATP synthase subunit beta OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=atpD PE=3 S... ATPB_ECO24 - ATP synthase subunit beta OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=atpD PE=3 SV=1 gi\|254795738, gi... - gi\|254795738\|ref\|YP_003080575.1\| F1 sector of membrane-bound ATP synthase, beta subunit [Escherichia... gi\|75258271, gi\|... - gi\|75258271\|ref\|ZP_00729719.1\| COG0055: F0F1-type ATP synthase, beta subunit [Escherichia coli E22],... gi\|254163684, gi... - gi\|254163684\|ref\|YP_003046792.1\| F0F1 ATP synthase subunit beta [Escherichia coli B str. REL606], gi... gi\|188488877, gi... - gi\|75514202\|ref\|ZP_00736510.1\| COG0055: F0F1-type ATP synthase, beta subunit [Escherichia coli 53638... gi\|226838916, gi... - gi\|254038951\|ref\|ZP_04873003.1\| membrane-bound ATP synthase beta-subunit AtpD [Escherichia sp. 1_1_4... gi\|193069207, gi... - gi\|75236464\|ref\|ZP_00720560.1\| COG0055: F0F1-type ATP synthase, beta subunit [Escherichia coli E1100... gi\|253326677, gi... - gi\|254290434\|ref\|YP_003056182.1\| F0F1 ATP synthase subunit beta [Escherichia coli BL21(DE3)], gi\|253... gi\|190909212, gi... - gi\|75242480\|ref\|ZP_00726224.1\| COG0055: F0F1-type ATP synthase, beta subunit [Escherichia coli F11],... gi\|251786997, gi... - gi\|251786997\|ref\|YP_003001301.1\| hypothetical protein B21_03560 [Escherichia coli BL21], gi\|24237927... ATPB_ECOBW - ATP synthase subunit beta OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=atpD PE=3 SV=1 gi\|226902797, gi... - gi\|237703533\|ref\|ZP_04534014.1\| membrane-bound ATP synthase beta-subunit AtpD [Escherichia sp. 3_2_5... gi\|227839232, gi... - gi\|227883954\|ref\|ZP_04001759.1\| H(+)-transporting two-sector ATPase [Escherichia coli 83972], gi\|227... gi\|194420499, gi... - gi\|83571336\|ref\|ZP_00922776.1\| COG0055: F0F1-type ATP synthase, beta subunit [Shigella dysenteriae 1... gi\|194435783, gi... - gi\|83588403\|ref\|ZP_00927027.1\| COG0055: F0F1-type ATP synthase, beta subunit [Escherichia coli 101-1... ATPB_SHIFL - ATP synthase subunit beta OS=Shigella flexneri GN=atpD PE=3 SV=2 ATPB_ECOLI - ATP synthase subunit beta (EC 3.6.3.14) (ATPase subunit beta) (ATP synthase F1 sector subunit beta) ... gi\|24115035, gi\|... - gi\|24115035\|ref\|NP_709545.1\| F0F1 ATP synthase subunit beta [Shigella flexneri 2a str. 301], gi\|2405... ATPB_ECOL6 - ATP synthase subunit beta OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=atpD PE=... gi\|30043224, gi\|... - gi\|30064963\|ref\|NP_839134.1\| F0F1 ATP synthase subunit beta [Shigella flexneri 2a str. 2457T], gi\|30... gi\|208733369, gi... - gi\|208812092\|ref\|ZP_03253421.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC4045]... gi\|208818898, gi... - gi\|208818898\|ref\|ZP_03259218.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC4042]... ATPB_ECO5E - ATP synthase subunit beta OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=atpD PE=3 SV=1 ATPB_ECOSE - ATP synthase subunit beta OS=Escherichia coli (strain SE11) GN=atpD PE=3 SV=1 ATPB_ECO27 - ATP synthase subunit beta OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpD PE=3 SV=1 gi\|217320873, gi... - gi\|217324652\|ref\|ZP_03440736.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. TW14588... ATPB_ESCF3 - ATP synthase subunit beta OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN... ATPB_ECO8A - ATP synthase subunit beta OS=Escherichia coli O8 (strain IAI1) GN=atpD PE=3 SV=1 gi\|168779967, gi... - gi\|189002239\|gb\|EDU71225.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC4076], gi... gi\|189373310, gi... - gi\|189373310\|gb\|EDU91726.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC869], gi\|... gi\|189378771, gi... - gi\|189378771\|gb\|EDU97187.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC508], gi\|... ATPB_ECODH - ATP synthase subunit beta OS=Escherichia coli (strain K12 / DH10B) GN=atpD PE=3 SV=1 ATPB_ECOSM - ATP synthase subunit beta OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=atpD PE=3 SV=1 sp\|B7UMJ7\|ATPB_ECO27 - ATP synthase subunit beta OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=atpD PE=3 SV=1 gi\|170766683, gi... - gi\|170766683\|ref\|ZP_02901136.1\| ATP synthase F1, beta subunit [Escherichia albertii TW07627], gi\|170... gi\|195936359 - gi\|195936359\|ref\|ZP_03081741.1\| F0F1 ATP synthase subunit beta [Escherichia coli O157:H7 str. EC4024... gi\|208807011, gi... - gi\|208807011\|ref\|ZP_03249348.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC4206]... ATPB_ECO45 - ATP synthase subunit beta OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=atpD PE=3 SV=1 ATPB_ECOK1 - ATP synthase subunit beta OS=Escherichia coli O1:K1 / APEC GN=atpD PE=3 SV=1 ATPB_ECO81 - ATP synthase subunit beta OS=Escherichia coli O81 (strain ED1a) GN=atpD PE=3 SV=1 gi\|124530054, gi... - gi\|124530054\|ref\|ZP_01700837.1\| ATP synthase F1, beta subunit [Escherichia coli B], gi\|124499459\|gb\|... ATPB_ECO55 - ATP synthase subunit beta OS=Escherichia coli (strain 55989 / EAEC) GN=atpD PE=3 SV=1 ATPB_ECO7I - ATP synthase subunit beta OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=atpD PE=3 SV=1 ATPB_ECOLU - ATP synthase subunit beta OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=atpD PE=3 SV=1 gi\|188016914, gi... - gi\|188016914\|gb\|EDU55036.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC4113], gi... gi\|168753634, gi... - gi\|189359262\|gb\|EDU77681.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC4401], gi... gi\|189369653, gi... - gi\|189369653\|gb\|EDU88069.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC4501], gi... gi\|189364495, gi... - gi\|189364495\|gb\|EDU82914.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC4486], gi... gi\|168772219, gi... - gi\|187771754\|gb\|EDU35598.1\| ATP synthase F1, beta subunit [Escherichia coli O157:H7 str. EC4196], gi... EG10101 - F1 sector of membrane-bound ATP synthase, beta subunit / ATP synthase subunit beta, membrane-bound, ... ATPB_ECOLC - ATP synthase subunit beta OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=atpD PE=3 SV... ATPB_ECOUT - ATP synthase subunit beta OS=Escherichia coli (strain UTI89 / UPEC) GN=atpD PE=3 SV=1 gi\|15833928, gi\|... - gi\|15833928\|ref\|NP_312701.1\| F0F1 ATP synthase subunit beta [Escherichia coli O157:H7 str. Sakai], g... ATPB_ECOL5 - ATP synthase subunit beta OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=atpD PE=3 SV=1 ATPB_SHIF8 - ATP synthase subunit beta OS=Shigella flexneri serotype 5b (strain 8401) GN=atpD PE=3 SV=1	0.0	[1..460]	[1..460]
ATPB_BACCQ - ATP synthase subunit beta OS=Bacillus cereus (strain Q1) GN=atpD PE=3 SV=1 ATPB_BACC7 - ATP synthase subunit beta OS=Bacillus cereus (strain AH187) GN=atpD PE=3 SV=1 gi\|206976897, gi... - gi\|206976897\|ref\|ZP_03237799.1\| ATP synthase F1, beta subunit [Bacillus cereus H3081.97], gi\|2067448... ATPB_BACC1 - ATP synthase subunit beta OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=atpD PE=3 SV=1 gi\|229142046, gi... - gi\|229142046\|ref\|ZP_04270571.1\| ATP synthase subunit beta [Bacillus cereus BDRD-ST26], gi\|228641335\|...	0.0	[1..460]	[1..466]
gi\|229331213, gi... - gi\|229497787\|ref\|ZP_04391486.1\| ATP synthase F1, beta subunit [Geobacillus sp. Y412MC52], gi\|2293312... ATPB_GEOKA - ATP synthase subunit beta OS=Geobacillus kaustophilus (strain HTA426) GN=atpD PE=1 SV=1 ATPB_GEOKA - ATP synthase subunit beta OS=Geobacillus kaustophilus GN=atpD PE=3 SV=1 gi\|220709127, gi... - gi\|221087074\|ref\|ZP_03556614.1\| ATP synthase F1, beta subunit [Geobacillus sp. Y412MC61], gi\|2207091...	0.0	[1..460]	[1..469]
ATPB_ECOHS - ATP synthase subunit beta OS=Escherichia coli O9:H4 (strain HS) GN=atpD PE=3 SV=1	0.0	[1..460]	[1..460]
ATPB_SALPA - ATP synthase subunit beta OS=Salmonella paratyphi A GN=atpD PE=3 SV=1 ATPB_SALPK - ATP synthase subunit beta OS=Salmonella paratyphi A (strain AKU_12601) GN=atpD PE=3 SV=1 ATPB_SALPA - ATP synthase subunit beta OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=atpD PE=3 SV=1	0.0	[1..460]	[1..460]
ATPB_PECAS - ATP synthase subunit beta OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=atpD P... ATPB_ERWCT - ATP synthase subunit beta OS=Erwinia carotovora subsp. atroseptica GN=atpD PE=3 SV=1	0.0	[1..460]	[1..460]
gi\|6625703 - gi\|6625703\|gb\|AAF19362.1\|AF188265_8 ATP synthase subunit beta [Salmonella typhimurium] gi\|6625703\|gb\|AA... - ATP synthase subunit beta [Salmonella typhimurium]	0.0	[1..460]	[1..460]

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Predicted Domain #1

Region A:
Residues: [1-460]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGKIVQVI GAVVDVEFPQ DAVPRVYDAL EVQNGNEKLV LEVQQQLGGG IVRTIAMGSS  60
   61 DGLRRGLDVK DLEHPIEVPV GKATLGRIMN VLGEPVDMKG EIGEEERWAI HRAAPSYEEL 120
  121 SNSQELLETG IKVIDLMCPF AKGGKVGLFG GAGVGKTVNM MELIRNIAIE HSGYSVFAGV 180
  181 GERTREGNDF YHEMTDSNVI DKVSLVYGQM NEPPGNRLRV ALTGLTMAEK FRDEGRDVLL 240
  241 FVDNIYRYTL AGTEVSALLG RMPSAVGYQP TLAEEMGVLQ ERITSTKTGS ITSVQAVYVP 300
  301 ADDLTDPSPA TTFAHLDATV VLSRQIASLG IYPAVDPLDS TSRQLDPLVV GQEHYDTARG 360
  361 VQSILQRYQE LKDIIAILGM DELSEEDKLV VARARKIQRF LSQPFFVAEV FTGSPGKYVS 420
  421 LKDTIRGFKG IMEGEYDHLP EQAFYMVGSI DEAVEKAKKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qe7D
Description:	No description for 2qe7D was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits