YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214000944
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214000944.

Description	E-value	Query Range	Subject Range
gi\|37527881, gi\|... - gi\|37527881\|ref\|NP_931226.1\| hypothetical protein plu4029 [Photorhabdus luminescens subsp. laumondii... gi\|253991140, gi... - gi\|253991140\|ref\|YP_003042496.1\| transcriptional regulator protein yrba [Photorhabdus asymbiotica], ...	1.0E-27	[14..97]	[1..84]
gi\|85058188, gi\|... - gi\|85058188\|ref\|YP_453890.1\| hypothetical protein SG0210 [Sodalis glossinidius str. 'morsitans'], gi...	6.0E-27	[14..97]	[1..84]
gi\|51597806, gi\|... - gi\|51597806\|ref\|YP_071997.1\| putative BolA/YrbA family protein [Yersinia pseudotuberculosis IP 32953... Q665K3\|Q665K3_YERPS - Putative BolA/YrbA family protein - Yersinia pseudotuberculosis gi\|117672257 - gi\|117672257\|ref\|ZP_01495315.1\| hypothetical protein YpseI_02000418 [Yersinia pseudotuberculosis IP ... gi\|186896998, gi... - gi\|186896998\|ref\|YP_001874110.1\| BolA family protein [Yersinia pseudotuberculosis PB1/+], gi\|1867000... gi\|169749302, gi... - gi\|170022768\|ref\|YP_001719273.1\| BolA family protein [Yersinia pseudotuberculosis YPIII], gi\|1697493...	1.0E-26	[14..97]	[4..87]
gi\|77630514, gi\|... - gi\|77630514\|ref\|ZP_00793100.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi...	1.0E-26	[14..97]	[1..84]
gi\|25300381 - pir\|\|AC0434 BolA-like protein [imported] - Yersinia pestis (strain CO92) gi\|45438425, gi\|... - gi\|45443556\|ref\|NP_995095.1\| BolA-like protein [Yersinia pestis biovar Microtus str. 91001], gi\|4543... gi\|21956808, gi\|... - gi\|22124061\|ref\|NP_667484.1\| morphology/transcription regulator BolA family protein [Yersinia pesti... gi\|108777260, gi... - gi\|108813612\|ref\|YP_649379.1\| BolA-like protein [Yersinia pestis Nepal516], gi\|108777260\|gb\|ABG19779... gi\|15981492, gi\|... - gi\|218930582\|ref\|YP_002348457.1\| BolA-like protein [Yersinia pestis CO92], gi\|16123714\|ref\|NP_407027... gi\|153997345, gi... - gi\|153997345\|ref\|ZP_02022445.1\| BolA-like protein [Yersinia pestis CA88-4125], gi\|149288982\|gb\|EDM39... gi\|145597643, gi... - gi\|145597643\|ref\|YP_001161719.1\| BolA-like protein [Yersinia pestis Pestoides F], gi\|145209339\|gb\|AB... gi\|77635684 - gi\|77635684\|ref\|ZP_00797765.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi... gi\|89102356 - gi\|89102356\|ref\|ZP_01174996.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi... gi\|108809724, gi... - gi\|108809724\|ref\|YP_653640.1\| BolA-like protein [Yersinia pestis Antiqua], gi\|108781637\|gb\|ABG15695....	1.0E-26	[14..97]	[4..87]
gi\|238785103, gi... - gi\|77957469\|ref\|ZP_00821524.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi...	2.0E-26	[14..97]	[1..84]
gi\|124528470, gi... - gi\|124528470\|ref\|ZP_01699759.1\| BolA family protein [Escherichia coli B], gi\|124500493\|gb\|EAY47965.1... gi\|6648611 - gi\|6648611\|gb\|AAF21251.1\|AF053073_4 YrbA [Shigella flexneri] gi\|7443859, gi\|2... - pir\|\|H65109 hypothetical 9.5 kD protein in murZ-rpoN intergenic region - Escherichia coli (strain K-... gi\|26249774, gi\|... - gi\|26249774\|ref\|NP_755814.1\| hypothetical protein c3948 [Escherichia coli CFT073], gi\|26110202\|gb\|AA... gi\|24053662, gi\|... - gi\|24114479\|ref\|NP_708989.1\| hypothetical protein SF3230 [Shigella flexneri 2a str. 301], gi\|2405366... gi\|606128\|gb\|AAA... - ORF_f89 [Escherichia coli] gi\|74313727, gi\|... - gi\|74313727\|ref\|YP_312146.1\| hypothetical protein SSON_3338 [Shigella sonnei Ss046], gi\|73857204\|gb\|... gi\|81242652, gi\|... - gi\|82778504\|ref\|YP_404853.1\| hypothetical protein SDY_3371 [Shigella dysenteriae Sd197], gi\|81242652... gi\|75256566, gi\|... - gi\|75256566\|ref\|ZP_00728196.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Esche... gi\|188495302, gi... - gi\|75511907\|ref\|ZP_00734519.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Esche... gi\|82545572, gi\|... - gi\|82545572\|ref\|YP_409519.1\| hypothetical protein SBO_3192 [Shigella boydii Sb227], gi\|81246983\|gb\|A... gi\|75176118, gi\|... - gi\|75176118\|ref\|ZP_00696286.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Shige... gi\|110616604, gi... - gi\|110807056\|ref\|YP_690576.1\| hypothetical protein SFV_3220 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|170520782, gi... - gi\|170683064\|ref\|YP_001745462.1\| BolA/YrbA family protein [Escherichia coli SMS-3-5], gi\|170520782\|g... gi\|157155993, gi... - gi\|75187996\|ref\|ZP_00701263.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Esche... gi\|194417267, gi... - gi\|194434488\|ref\|ZP_03066748.1\| BolA/YrbA family protein [Shigella dysenteriae 1012], gi\|194417267\|g... gi\|195940046 - gi\|195940046\|ref\|ZP_03085428.1\| putative DNA-binding transcriptional regulator [Escherichia coli O15... gi\|83585432, gi\|... - gi\|83585432\|ref\|ZP_00924078.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Esche... gi\|208726085, gi... - gi\|208806284\|ref\|ZP_03248621.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|75236229 - gi\|75236229\|ref\|ZP_00720339.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Esche... gi\|208812445, gi... - gi\|208812445\|ref\|ZP_03253774.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|226839979, gi... - gi\|254038355\|ref\|ZP_04872413.1\| YrbA family protein [Escherichia sp. 1_1_43], gi\|226839979\|gb\|EEH720... gi\|193070299, gi... - gi\|75234896\|ref\|ZP_00719187.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Esche... gi\|91074187, gi\|... - gi\|91212613\|ref\|YP_542599.1\| hypothetical protein UTI89_C3624 [Escherichia coli UTI89], gi\|91074187\|... gi\|208740699, gi... - gi\|208820576\|ref\|ZP_03260896.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4042], gi\|... gi\|253771976, gi... - gi\|253771976\|ref\|YP_003034807.1\| BolA family protein [Escherichia coli BL21(DE3)], gi\|253323020\|gb\|A... gi\|75197139 - gi\|75197139\|ref\|ZP_00707209.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Esche... gi\|13363542, gi\|... - gi\|15833323\|ref\|NP_312096.1\| hypothetical protein ECs4069 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209396580, gi... - gi\|209396580\|ref\|YP_002272660.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4115], gi... gi\|237706058, gi... - gi\|237706058\|ref\|ZP_04536539.1\| BolA/YrbA family protein [Escherichia sp. 3_2_53FAA], gi\|226899098\|g... gi\|191168630, gi... - gi\|75228151\|ref\|ZP_00714816.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Esche... gi\|110643430, gi... - gi\|110643430\|ref\|YP_671160.1\| BolA family transcriptional regulator [Escherichia coli 536], gi\|11034... gi\|217320014, gi... - gi\|217327647\|ref\|ZP_03443730.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. TW14588], gi... gi\|227835307, gi... - gi\|227887911\|ref\|ZP_04005716.1\| BolA superfamily transcriptional regulator [Escherichia coli 83972],... gi\|168751596, gi... - gi\|188014358\|gb\|EDU52480.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168754172, gi... - gi\|189358505\|gb\|EDU76924.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|168763727, gi... - gi\|189366118\|gb\|EDU84534.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|189361731, gi... - gi\|189361731\|gb\|EDU80150.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|187767451, gi... - gi\|187767451\|gb\|EDU31295.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189001060, gi... - gi\|189001060\|gb\|EDU70046.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|189373869, gi... - gi\|189373869\|gb\|EDU92285.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|168800904, gi... - gi\|189376816\|gb\|EDU95232.1\| BolA/YrbA family protein [Escherichia coli O157:H7 str. EC508], gi\|16880... gi\|13363542, gi\|... - gi\|15833323\|ref\|NP_312096.1\| hypothetical protein ECs4069 [Escherichia coli O157:H7], gi\|13363542\|db... gi\|30042787, gi\|... - gi\|30064528\|ref\|NP_838699.1\| hypothetical protein S3448 [Shigella flexneri 2a str. 2457T], gi\|300427... gi\|12517805, gi\|... - gi\|15803730\|ref\|NP_289764.1\| hypothetical protein Z4553 [Escherichia coli O157:H7 EDL933], gi\|125178... gi\|1789581, gi\|1... - gb\|AAC76222.1\| orf, hypothetical protein; putative transcriptional regulator (BolA family) [Escheric... gi\|117625483, gi... - gi\|117625483\|ref\|YP_858806.1\| putative DNA-binding transcriptional regulator [Escherichia coli APEC ...	4.0E-26	[13..97]	[5..89]
gi\|50513260 - gi\|50513260\|pdb\|1NY8\|A Chain A, Solution Structure Of Protein Yrba From Escherichia Coli: Northeast ...	5.0E-26	[13..97]	[5..89]
gi\|238722109, gi... - gi\|77973400\|ref\|ZP_00828948.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi... gi\|238726940, gi... - gi\|77977077\|ref\|ZP_00832537.1\| COG5007: Predicted transcriptional regulator, BolA superfamily [Yersi...	6.0E-26	[14..97]	[1..84]
gi\|218701959, gi... - gi\|218701959\|ref\|YP_002409588.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|218696895, gi... - gi\|218696895\|ref\|YP_002404562.1\| putative DNA-binding transcriptional regulator [Escherichia coli 55... EG12796 - acid stress protein; putative BolA family transcriptional regulator / Acid stress protein; predicted... gi\|218691480, gi... - gi\|218691480\|ref\|YP_002399692.1\| putative DNA-binding transcriptional regulator [Escherichia coli ED... gi\|89109953, gi\|... - gi\|89109953\|ref\|AP_003733.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... gi\|218560260, gi... - gi\|218560260\|ref\|YP_002393173.1\| putative DNA-binding transcriptional regulator [Escherichia coli S8... YRBA_ECOLI - Protein yrbA - Escherichia coli gi\|218433907, gi... - gi\|218706810\|ref\|YP_002414329.1\| putative DNA-binding transcriptional regulator [Escherichia coli UM... gi\|190905246, gi... - gi\|191174491\|ref\|ZP_03035991.1\| BolA/YrbA family protein [Escherichia coli F11], gi\|190905246\|gb\|EDV... gi\|169890559, gi... - gi\|170082724\|ref\|YP_001732044.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 s... IBAG_SHIFL - Acid stress protein IbaG OS=Shigella flexneri GN=ibaG PE=3 SV=1 gi\|169753488, gi... - gi\|170018560\|ref\|YP_001723514.1\| BolA family protein [Escherichia coli ATCC 8739], gi\|169753488\|gb\|A... gi\|218555760, gi... - gi\|218555760\|ref\|YP_002388673.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|218358014, gi... - gi\|218550473\|ref\|YP_002384264.1\| putative DNA-binding transcriptional regulator [Escherichia ferguso... IBAG_ECOL6 - Acid stress protein IbaG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ibaG PE=3... gi\|215488506, gi... - gi\|215488506\|ref\|YP_002330937.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... gi\|209913924, gi... - gi\|209920665\|ref\|YP_002294749.1\| hypothetical protein ECSE_3474 [Escherichia coli SE11], gi\|20991392... EG12796 - acid stress protein; putative BolA family transcriptional regulator / Acid stress protein; predicted... gi\|251786460, gi... - gi\|251786460\|ref\|YP_003000764.1\| hypothetical protein B21_03006 [Escherichia coli BL21], gi\|24237873... gi\|238862292, gi... - gi\|238902292\|ref\|YP_002928088.1\| putative DNA-binding transcriptional regulator [Escherichia coli BW... gi\|253979189, gi... - gi\|254289882\|ref\|YP_003055630.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|253975033, gi... - gi\|254163132\|ref\|YP_003046240.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|254594539, gi... - gi\|254795139\|ref\|YP_003079976.1\| predicted DNA-binding transcriptional regulator [Escherichia coli O... YRBA_ECOL6 - Uncharacterized protein YrbA OS=Escherichia coli O6 GN=yrbA PE=3 SV=1	1.0E-25	[14..97]	[1..84]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGCFHYLTN KEPMENHEIQ SVLMNALSLQ EVHVSGDGSH FQVIAVGEMF DGMSRVKKQQ  60
   61 TVYGPLMEYI ADNRIHAVSI KAYTPAEWAR DRKLNGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	1ny8A
Description:	Solution structure of Protein yrbA from Escherichia Coli: Northeast Structural Genomics Consortium target ER115
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits