YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190407972
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190407972.

Description	E-value	Query Range	Subject Range
gi\|74220170, gi\|... - gi\|74220170\|dbj\|BAE31270.1\| unnamed protein product [Mus musculus], gi\|74214621\|dbj\|BAE31151.1\| unna...	4.0E-48	[5..175]	[2..174]
gi\|182403 - gi\|182403\|gb\|AAA66351.1\| TB2	1.0E-47	[5..175]	[14..186]
YOP1 - Membrane protein that interacts with Yip1p to mediate membrane traffic; interacts with Sey1p to main... YOP1_YEAST - Protein YOP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOP1 PE=1 SV=3 gi\|151942817 - gi\|151942817\|gb\|EDN61163.1\| Yip1p-interacting protein [Saccharomyces cerevisiae YJM789] gi\|190407972 - gi\|190407972\|gb\|EDV11237.1\| protein YOP1 [Saccharomyces cerevisiae RM11-1a]	7.0E-47	[1..180]	[1..180]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	7.0E-47	[5..175]	[2..174]
gi\|17861922 - gi\|17861922\|gb\|AAL39438.1\| GM14577p [Drosophila melanogaster]	1.0E-46	[1..180]	[9..177]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEYASSIHS QMKQFDTKYS GNRILQQLEN KTNLPKSYLV AGLGFAYLLL IFINVGGVGE  60
   61 ILSNFAGFVL PAYLSLVALK TPTSTDDTQL LTYWIVFSFL SVIEFWSKAI LYLIPFYWFL 120
  121 KTVFLIYIAL PQTGGARMIY QKIVAPLTDR YILRDVSKTE KDEIRASVNE ASKATGASVH 180
  181

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Detection Method:	Pfam
Confidence:	50.309804
Match:	PF03134
Description:	TB2/DP1, HVA22 family

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits