YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|198243468, gi...
Organism:	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853
Length:	75 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|198243468, gi....

Description	E-value	Query Range	Subject Range
gi\|62129177, gi\|... - gi\|62181544\|ref\|YP_217961.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov...	117.0	[0..1]	[75..47]
gi\|193064713, gi... - gi\|75257281\|ref\|ZP_00728805.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|193068419, gi... - gi\|75237779\|ref\|ZP_00721795.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|75229200, gi\|... - gi\|75229200\|ref\|ZP_00715768.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|194414578, gi... - gi\|75211440\|ref\|ZP_00711530.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|75187222, gi\|... - gi\|75187222\|ref\|ZP_00700489.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|209919950, gi... - gi\|209919950\|ref\|YP_002294034.1\| hypothetical protein ECSE_2759 [Escherichia coli SE11], gi\|20991320...	112.0	[0..1]	[75..1]
gi\|56414981, gi\|... - gi\|56414981\|ref\|YP_152056.1\| hypothetical protein SPA2902 [Salmonella enterica subsp. enterica serov... gi\|224584825, gi... - gi\|224584825\|ref\|YP_002638623.1\| hypothetical protein (associated with virulence) [Salmonella enteri... gi\|197363910, gi... - gi\|197363910\|ref\|YP_002143547.1\| hypothetical protein (assiciated with virulence) [Salmonella enteri...	110.0	[0..1]	[75..1]
gi\|109389627, gi... - gi\|190014906\|ref\|YP_001965418.1\| Post-segregational killing toxin [Escherichia coli], gi\|109389627\|g... gi\|215276223, gi... - gi\|215276223\|ref\|YP_002332186.1\| post-segregational killing toxin [Escherichia coli O127:H6 str. E23...	108.0	[0..1]	[75..1]
gi\|194435279, gi... - gi\|194435279\|ref\|ZP_03067498.1\| putative virulence-associated protein [Shigella dysenteriae 1012], g... gi\|75176632 - gi\|75176632\|ref\|ZP_00696765.1\| COG4456: Virulence-associated protein and related proteins [Shigella ... gi\|32307073 - gi\|32307073\|gb\|AAP79035.1\| MvpT [Shigella flexneri] gi\|188501429, gi... - gi\|75512305\|ref\|ZP_00734867.1\| COG4456: Virulence-associated protein and related proteins [Escherich... gi\|81248289, gi\|... - gi\|82524787\|ref\|YP_406348.1\| plasmid maintenance protein [Shigella boydii Sb227], gi\|81248289\|gb\|ABB...	108.0	[0..1]	[75..1]
gi\|82524526, gi\|... - gi\|82524526\|ref\|YP_406121.1\| plasmid maintenance protein [Shigella dysenteriae Sd197], gi\|81243924\|g...	107.0	[0..1]	[75..1]
VAPB_SHIFL - Antitoxin VapB OS=Shigella flexneri GN=vapB PE=1 SV=1 gi\|31983570, gi\|... - gi\|31983570\|ref\|NP_858379.1\| plasmid maintenance protein [Shigella flexneri 2a str. 301], gi\|1846256... gi\|31983570, gi\|... - gi\|31983570\|ref\|NP_858379.1\| plasmid maintenance protein [Shigella flexneri 2a str. 301], gi\|1846256... gi\|13310745\|gb\|A... - plasmid maintenance protein [Shigella flexneri]	107.0	[0..1]	[75..1]
gi\|112823951, gi... - gi\|23467533\|ref\|ZP_00123114.1\| COG4456: Virulence-associated protein and related proteins [Haemophil...	106.0	[0..1]	[75..4]
lcl\|NC_016855.1_... - [gene=STM14_5625] [protein=putative cytoplasmic protein] [protein_id=YP_005235630.1] [location=compl... gi\|205327428, gi... - gi\|205358103\|ref\|ZP_03223925.1\| putative virulence-associated protein [Salmonella enterica subsp. en... gi\|16445326, gi\|... - gi\|17233505\|ref\|NP_490591.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16445326\|...	105.0	[0..1]	[75..2]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTTLFFSNR TQAVRLPKSI SFPEDVKHVE IIAVGRSRII TPVGESWDSW FDGEGASTDF  60
   61 MSTREQPAVQ EREGF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.91
Match:	1ub4C
Description:	MazE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits