YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194197783, gi...
Organism:	Drosophila simulans
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194197783, gi....

Description	E-value	Query Range	Subject Range
gi\|108875723, gi... - gi\|157118418\|ref\|XP_001659105.1\| Pupal cuticle protein, putative [Aedes aegypti], gi\|108875723\|gb\|EA...	138.0	[0..1]	[114..1]
gi\|54641064\|gb\|E... - GA20516-PA [Drosophila pseudoobscura], GA20516 [Drosophila pseudoobscura pseudoobscura] gi\|54641064, gi\|... - gi\|54641064\|gb\|EAL29815.1\| GA20516 [Drosophila pseudoobscura pseudoobscura], gi\|125980089\|ref\|XP_001...	135.0	[0..1]	[121..1]
gi\|91079648 - gi\|91079648\|ref\|XP_968350.1\| PREDICTED: similar to Cuticular protein 47Ef CG13214-PA [Tribolium cast...	127.0	[0..23]	[114..78]
gi\|68051541 - gi\|68051541\|gb\|AAY85034.1\| IP05675p [Drosophila melanogaster]	125.0	[0..1]	[113..7]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKYLFCLAL IGCACADNIN KDAQIRSFQN DATDAEGNYQ YAYETSNGIQ IQEAGNANGA  60
   61 RGAVAYVSPE GEHISLTYTA DEEGYHPVGD HLPTPPPVPA YVLRALEYIR THPPAPAQKE 120
  121 QQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	26.853872
Match:	PF00379.14
Description:	No description for PF00379.14 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits