YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|206709748, gi...
Organism:	Salmonella enterica subsp. enterica serovar Enteritidis str. P125109
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|206709748, gi....

Description	E-value	Query Range	Subject Range
gi\|33573350 - gi\|33573350\|emb\|CAE37334.1\| conserved hypothetical protein [Bordetella parapertussis] gi\|33596649 - gi\|33596649\|ref\|NP_884292.1\| hypothetical protein BPP2034 [Bordetella parapertussis 12822] gi\|33601265, gi\|... - gi\|33601265\|ref\|NP_888825.1\| hypothetical protein BB2282 [Bordetella bronchiseptica RB50], gi\|335757... gi\|33572515, gi\|... - gi\|33592867\|ref\|NP_880511.1\| hypothetical protein BP1805 [Bordetella pertussis Tohama I], gi\|3357251...	5.0E-23	[3..66]	[1..64]
gi\|68346582, gi\|... - gi\|70732283\|ref\|YP_262039.1\| hypothetical protein PFL_4959 [Pseudomonas fluorescens Pf-5], gi\|683465...	6.0E-23	[1..66]	[1..66]
ISCX_ECOL6 - Protein IscX OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=iscX PE=3 SV=1 gi\|218690644, gi... - gi\|218690644\|ref\|YP_002398856.1\| hypothetical protein ECED1_2955 [Escherichia coli ED1a], gi\|2184282... ISCX_ECOL6 - Protein iscX OS=Escherichia coli O6 GN=iscX PE=3 SV=1 gi\|227887559, gi... - gi\|227887559\|ref\|ZP_04005364.1\| FeS assembly protein IscX [Escherichia coli 83972], gi\|227835909\|gb\|...	9.0E-23	[1..66]	[1..66]
gi\|115422602, gi... - gi\|187478016\|ref\|YP_786040.1\| hypothetical protein BAV1514 [Bordetella avium 197N], gi\|115422602\|emb...	1.0E-22	[3..66]	[1..64]
gi\|166212354, gi... - gi\|166212354\|ref\|ZP_02238389.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165992593, gi... - gi\|166008211\|ref\|ZP_02229109.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167421457, gi... - gi\|167421457\|ref\|ZP_02313210.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167399693, gi... - gi\|167399693\|ref\|ZP_02305217.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... Q667Y7\|Q667Y7_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|167468083 - gi\|167468083\|ref\|ZP_02332787.1\| hypothetical protein YpesF_09329 [Yersinia pestis FV-1] gi\|229694840, gi... - gi\|229838474\|ref\|ZP_04458633.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|167057473, gi... - gi\|167423303\|ref\|ZP_02315056.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|229895479, gi... - gi\|229895479\|ref\|ZP_04510650.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229701285\|gb\|EEO... gi\|186699289, gi... - gi\|186896263\|ref\|YP_001873375.1\| hypothetical protein YPTS_2961 [Yersinia pseudotuberculosis PB1/+],... gi\|229899043, gi... - gi\|229899043\|ref\|ZP_04514187.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|170023528, gi... - gi\|170023528\|ref\|YP_001720033.1\| hypothetical protein YPK_1282 [Yersinia pseudotuberculosis YPIII], ... gi\|165937058, gi... - gi\|89102342\|ref\|ZP_01174983.1\| COG2975: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|25510945 - pir\|\|AB0352 conserved hypothetical protein YPO2890 [imported] - Yersinia pestis (strain CO92) gi\|45437209, gi\|... - gi\|45442345\|ref\|NP_993884.1\| hypothetical protein YP_2565 [Yersinia pestis biovar Microtus str. 9100... gi\|22125240, gi\|... - gi\|22125240\|ref\|NP_668663.1\| hypothetical protein y1341 [Yersinia pestis KIM], gi\|21958109\|gb\|AAM849... gi\|218929949, gi... - gi\|218929949\|ref\|YP_002347824.1\| hypothetical protein YPO2890 [Yersinia pestis CO92], gi\|16123081\|re... gi\|51597169, gi\|... - gi\|51597169\|ref\|YP_071360.1\| hypothetical protein YPTB2853 [Yersinia pseudotuberculosis IP 32953], g... gi\|149291762, gi... - gi\|149365349\|ref\|ZP_01887384.1\| hypothetical protein YPE_0503 [Yersinia pestis CA88-4125], gi\|149291... gi\|145599507, gi... - gi\|145599507\|ref\|YP_001163583.1\| hypothetical protein YPDSF_2235 [Yersinia pestis Pestoides F], gi\|1... gi\|108808325, gi... - gi\|108808325\|ref\|YP_652241.1\| hypothetical protein YPA_2331 [Yersinia pestis Antiqua], gi\|108780238\|... gi\|162419675, gi... - gi\|77633386\|ref\|ZP_00795519.1\| COG2975: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|229681593, gi... - gi\|229901664\|ref\|ZP_04516786.1\| conserved protein [Yersinia pestis Nepal516], gi\|229681593\|gb\|EEO776... gi\|153949156, gi... - gi\|77629889\|ref\|ZP_00792475.1\| COG2975: Uncharacterized protein conserved in bacteria [Yersinia pseu...	1.0E-22	[1..66]	[1..66]
gi\|28805588 - gi\|28805588\|dbj\|BAC58865.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28897376, gi\|... - gi\|28897376\|ref\|NP_796981.1\| hypothetical protein VP0602 [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|149748058, gi... - gi\|153838543\|ref\|ZP_01991210.1\| conserved domain protein [Vibrio parahaemolyticus AQ3810], gi\|149748...	1.0E-22	[3..66]	[1..64]
tr\|I7CA12\|I7CA12... - Uncharacterized protein OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_4172 PE=4 SV=1 gi\|26987584, gi\|... - gi\|26987584\|ref\|NP_743009.1\| hypothetical protein PP_0848 [Pseudomonas putida KT2440], gi\|24982260\|g... gi\|119814115, gi... - gi\|170723491\|ref\|YP_001751179.1\| FeS assembly protein IscX [Pseudomonas putida W619], gi\|169761494\|g... gi\|82714516, gi\|... - gi\|82738436\|ref\|ZP_00901269.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714516\|g... gi\|126357513, gi... - gi\|167031906\|ref\|YP_001667137.1\| FeS assembly protein IscX [Pseudomonas putida GB-1], gi\|166858394\|g... tr\|E4R528\|E4R528... - Uncharacterized protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_0899 PE=4 SV=1	1.0E-22	[1..66]	[1..66]
gi\|37197687, gi\|... - gi\|37678945\|ref\|NP_933554.1\| hypothetical protein VV0761 [Vibrio vulnificus YJ016], gi\|37197687\|dbj\|...	1.0E-22	[1..66]	[6..71]
gi\|75857370, gi\|... - gi\|75857370\|ref\|ZP_00764986.1\| COG2975: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	1.0E-22	[3..66]	[1..64]
gi\|104780235, gi... - gi\|95109222\|emb\|CAK13919.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047802... gi\|95109222 - gi\|95109222\|emb\|CAK13919.1\| conserved hypothetical protein [Pseudomonas entomophila L48]	2.0E-22	[1..66]	[1..66]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLKWTDSRE IGEALYDAYP DVDPKTVRFT DLHQWICELD DFDDDPNASN EKILEAILLV  60
   61 WLDEAE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	2bztA
Description:	No description for 2bztA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits