YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221321487
Organism:	Bacillus subtilis subsp. subtilis str. SMY
Length:	198 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221321487.

Description	E-value	Query Range	Subject Range
gi\|29893958, gi\|... - gi\|30018418\|ref\|NP_830049.1\| KINB signaling pathway activation protein [Bacillus cereus ATCC 14579],... gi\|228956590, gi... - gi\|228956590\|ref\|ZP_04118386.1\| KinB-signaling pathway activation protein [Bacillus thuringiensis se... gi\|228634974, gi... - gi\|229148558\|ref\|ZP_04276814.1\| KinB-signaling pathway activation protein [Bacillus cereus m1550], g... gi\|228657858, gi... - gi\|229125666\|ref\|ZP_04254698.1\| KinB-signaling pathway activation protein [Bacillus cereus BDRD-Cer4... gi\|229107835, gi... - gi\|229107835\|ref\|ZP_04237471.1\| KinB-signaling pathway activation protein [Bacillus cereus Rock1-15]...	261.0	[0..1]	[198..1]

Back

Predicted Domain #1

Region A:
Residues: [1-198]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSRGLVRFF FSILAVGALI TSIVGFALKW GEYRGLFLTF EAGQIFSVLF WFIGVGMIFS  60
   61 VISQMGFFVF LTVHRFALEI LRSSSLWNLL QLFFILFVAF DLMYVRFLFF GESGESLAGY 120
  121 AWLPVFLLIF GVITAYIKQK QSSKKTFVSS LFLMVVITAL EWFPALRVND EDWLYLMLFP 180
  181 LMACNAFQLL MLPKFAAK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits