YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254401451, gi...
Organism:	Streptomyces sviceus ATCC 29083
Length:	54 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254401451, gi....

Description	E-value	Query Range	Subject Range
gi\|15807043, gi\|... - gi\|6459841\|gb\|AAF11599.1\|AE002041_3 ribosomal protein L33 [Deinococcus radiodurans R1], gi\|15807043\|... gi\|28948945, gi\|... - gi\|7473826\|pir\|\|D75321 ribosomal protein L33 - Deinococcus radiodurans (strain R1), gi\|51247398\|pdb\|... gi\|66361047\|pdb\|... - Chain 6, Crystal Structure Of 70s Ribosome With Thrs Operator And Trnas. Large Subunit. The Coordina... gi\|88192402, gi\|... - gi\|88192402\|pdb\|2B9P\|6 Chain 6, 50s Ribosomal Subunit From A Crystal Structure Of The Ribosome In Co...	79.0	[0..1]	[54..28]
RL33_FRAAA - 50S ribosomal protein L33 OS=Frankia alni (strain ACN14a) GN=rpmG PE=3 SV=1 RL33_FRASC - 50S ribosomal protein L33 OS=Frankia sp. (strain CcI3) GN=rpmG PE=3 SV=1	78.0	[0..1]	[54..1]
RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum GN=rpmG PE=3 SV=1 RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum (strain NCC 2705) GN=rpmG PE=3 SV=1 gi\|23336434 - gi\|23336434\|ref\|ZP_00121652.1\| COG0267: Ribosomal protein L33 [Bifidobacterium longum DJO10A] gi\|227213107, gi... - gi\|227546450\|ref\|ZP_03976499.1\| ribosomal protein L33 [Bifidobacterium longum subsp. infantis ATCC 5... gi\|223466532, gi... - gi\|223466532\|ref\|ZP_03618068.1\| hypothetical protein BIFBRE_00234 [Bifidobacterium breve DSM 20213],...	77.0	[0..1]	[54..3]
RL33_ACIC1 - 50S ribosomal protein L33 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rpmG PE=3 SV=1	77.0	[0..2]	[54..3]
gi\|50956440 - gi\|50956440\|gb\|AAT90748.1\| RpmG [Bifidobacterium animalis] gi\|183218810, gi... - gi\|183601925\|ref\|ZP_02963294.1\| 50S ribosomal protein L33 [Bifidobacterium animalis subsp. lactis HN... gi\|50956440 - gi\|50956440\|gb\|AAT90748.1\| RpmG [Bifidobacterium animalis] gi\|240248807, gi... - gi\|241190415\|ref\|YP_002967809.1\| 50S ribosomal protein L33 [Bifidobacterium animalis subsp. lactis B... gi\|241195821, gi... - gi\|241195821\|ref\|YP_002969376.1\| 50S ribosomal protein L33 [Bifidobacterium animalis subsp. lactis D...	77.0	[0..1]	[54..1]
gi\|86163693, gi\|... - gi\|87120855\|ref\|ZP_01076747.1\| RpmG protein [Marinomonas sp. MED121], gi\|86163693\|gb\|EAQ64966.1\| Rpm...	77.0	[0..1]	[54..1]
gi\|46907561, gi\|... - gi\|46907561\|ref\|YP_013950.1\| 50S ribosomal protein L33 [Listeria monocytogenes str. 4b F2365], gi\|46...	77.0	[0..1]	[54..1]
gi\|98660438 - gi\|98660438\|dbj\|GAA02280.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	77.0	[0..5]	[54..25]
RL33_FRASN - 50S ribosomal protein L33 OS=Frankia sp. (strain EAN1pec) GN=rpmG PE=3 SV=1	77.0	[0..1]	[54..1]
gi\|154084579, gi... - gi\|154486716\|ref\|ZP_02028123.1\| hypothetical protein BIFADO_00540 [Bifidobacterium adolescentis L2-3... gi\|283455344\|ref... - rpmG LSU ribosomal protein L33P [Bifidobacterium dentium Bd1] gi\|225351080, gi... - gi\|225351080\|ref\|ZP_03742103.1\| hypothetical protein BIFPSEUDO_02663 [Bifidobacterium pseudocatenula... RL33_BIFAA - 50S ribosomal protein L33 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 1181... gi\|212660352, gi... - gi\|212716648\|ref\|ZP_03324776.1\| hypothetical protein BIFCAT_01578 [Bifidobacterium catenulatum DSM 1... gi\|171741296, gi... - gi\|171741296\|ref\|ZP_02917103.1\| hypothetical protein BIFDEN_00372 [Bifidobacterium dentium ATCC 2767... gi\|85666393 - gi\|85666393\|ref\|ZP_01028617.1\| hypothetical protein Badol_01001236 [Bifidobacterium adolescentis]	76.0	[0..1]	[54..1]

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Predicted Domain #1

Region A:
Residues: [1-54]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATDVRPKI TLACVECKER NYITKKNRRN NPDRLEMKKH CPRCNAHTAH RETR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.522879
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits