YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|170024700, gi...
Organism:	Yersinia pseudotuberculosis YPIII
Length:	38 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|170024700, gi....

Description	E-value	Query Range	Subject Range
gi\|91211043, gi\|... - gi\|91211043\|ref\|YP_541029.1\| hypothetical protein UTI89_C2022 [Escherichia coli UTI89], gi\|91072617\|... gi\|13362001, gi\|... - gi\|15831788\|ref\|NP_310561.1\| hypothetical protein ECs2534 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|110641941, gi... - gi\|110641941\|ref\|YP_669671.1\| hypothetical protein ECP_1767 [Escherichia coli 536], gi\|110343533\|gb\|... YOBF_ECOLI - Hypothetical protein yobF - Escherichia coli YOBF_ECOL6 - Uncharacterized protein yobF OS=Escherichia coli O6 GN=yobF PE=4 SV=1 gi\|157161290, gi... - gi\|157161290\|ref\|YP_001458608.1\| hypothetical protein EcHS_A1914 [Escherichia coli HS], gi\|157066970... EG14382 - DUF2527 family heat-induced protein / DUF2527 family heat-induced protein, function unknown gi\|157078924, gi... - gi\|157156894\|ref\|YP_001463125.1\| hypothetical protein EcE24377A_2052 [Escherichia coli E24377A], gi\|... YOBF_SHIFL - Uncharacterized protein YobF OS=Shigella flexneri GN=yobF PE=4 SV=1 YOBF_ECO57 - Uncharacterized protein YobF OS=Escherichia coli O157:H7 GN=yobF PE=4 SV=1 gi\|191171736, gi... - gi\|191171736\|ref\|ZP_03033283.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908066\|... gi\|188486978, gi... - gi\|188491779\|ref\|ZP_02999049.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848697... gi\|170683542, gi... - gi\|170683542\|ref\|YP_001743422.1\| hypothetical protein EcSMS35_1364 [Escherichia coli SMS-3-5], gi\|17... gi\|169889314, gi... - gi\|170081479\|ref\|YP_001730799.1\| hypothetical protein ECDH10B_1962 [Escherichia coli str. K-12 subst... gi\|208731401, gi... - gi\|208817058\|ref\|ZP_03258178.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|195940303 - gi\|195940303\|ref\|ZP_03085685.1\| hypothetical protein EscherichcoliO157_28564 [Escherichia coli O157:... gi\|194434932, gi... - gi\|194434932\|ref\|ZP_03067176.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|194430506, gi... - gi\|194430506\|ref\|ZP_03062980.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194411447... gi\|189372042, gi... - gi\|189372042\|gb\|EDU90458.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168783121, gi... - gi\|188999465\|gb\|EDU68451.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189360376, gi... - gi\|189360376\|gb\|EDU78795.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168765205, gi... - gi\|189364972\|gb\|EDU83388.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... YOBF_ECOL6 - Uncharacterized protein YobF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yobF ... gi\|24112786, gi\|... - gi\|24112786\|ref\|NP_707296.1\| hypothetical protein SF1402 [Shigella flexneri 2a str. 301], gi\|2405171... gi\|218705323, gi... - gi\|218705323\|ref\|YP_002412842.1\| hypothetical protein ECUMN_2117 [Escherichia coli UMN026], gi\|21843... EG14382 - DUF2527 family heat-induced protein / DUF2527 family heat-induced protein, function unknown gi\|218699606, gi... - gi\|218699606\|ref\|YP_002407235.1\| hypothetical protein ECIAI39_1227 [Escherichia coli IAI39], gi\|2183... gi\|30041169, gi\|... - gi\|30062920\|ref\|NP_837091.1\| hypothetical protein S1517 [Shigella flexneri 2a str. 2457T], gi\|300411... gi\|218695387, gi... - gi\|218695387\|ref\|YP_002403054.1\| hypothetical protein EC55989_1998 [Escherichia coli 55989], gi\|2183... gi\|15802237, gi\|... - gi\|15802237\|ref\|NP_288260.1\| hypothetical protein Z2869 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|215487036, gi... - gi\|215487036\|ref\|YP_002329467.1\| hypothetical protein E2348C_1948 [Escherichia coli O127:H6 str. E23... gi\|209919189, gi... - gi\|209919189\|ref\|YP_002293273.1\| hypothetical protein ECSE_1998 [Escherichia coli SE11], gi\|20991244... gi\|209395972, gi... - gi\|209395972\|ref\|YP_002270904.1\| hypothetical protein ECH74115_2555 [Escherichia coli O157:H7 str. E... gi\|208740182, gi... - gi\|208820059\|ref\|ZP_03260379.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|218689760, gi... - gi\|218689760\|ref\|YP_002397972.1\| hypothetical protein ECED1_2027 [Escherichia coli ED1a], gi\|2184273... gi\|218365455, gi... - gi\|218558686\|ref\|YP_002391599.1\| hypothetical protein ECS88_1876 [Escherichia coli S88], gi\|21836545... gi\|218361165, gi... - gi\|218554397\|ref\|YP_002387310.1\| hypothetical protein ECIAI1_1894 [Escherichia coli IAI1], gi\|218361... gi\|217328974, gi... - gi\|217328974\|ref\|ZP_03445055.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|237705775, gi... - gi\|237705775\|ref\|ZP_04536256.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|227837323, gi... - gi\|227885750\|ref\|ZP_04003555.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783732... gi\|251785271, gi... - gi\|251785271\|ref\|YP_002999575.1\| hypothetical protein B21_01782 [Escherichia coli BL21], gi\|24237754... gi\|238901038, gi... - gi\|238901038\|ref\|YP_002926834.1\| hypothetical protein BWG_1637 [Escherichia coli BW2952], gi\|2388628... gi\|253973784, gi... - gi\|254161883\|ref\|YP_003044991.1\| hypothetical protein ECB_01794 [Escherichia coli B str. REL606], gi... gi\|253324266, gi... - gi\|254288671\|ref\|YP_003054419.1\| hypothetical protein ECD_01794 [Escherichia coli BL21(DE3)], gi\|253... gi\|254592847, gi... - gi\|254793447\|ref\|YP_003078284.1\| hypothetical protein ECSP_2397 [Escherichia coli O157:H7 str. TW143... gi\|81241360, gi\|... - gi\|82777212\|ref\|YP_403561.1\| hypothetical protein SDY_1970 [Shigella dysenteriae Sd197], gi\|81241360... gi\|82543746, gi\|... - gi\|82543746\|ref\|YP_407693.1\| hypothetical protein SBO_1237 [Shigella boydii Sb227], gi\|81245157\|gb\|A... gi\|85675135, gi\|... - gi\|89108663\|ref\|AP_002443.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856...	5.0E-9	[1..38]	[1..38]
gi\|29141515, gi\|... - gi\|29141515\|ref\|NP_804857.1\| hypothetical protein t1040 [Salmonella enterica subsp. enterica serovar... gi\|224468199, gi... - gi\|224583672\|ref\|YP_002637470.1\| hypothetical protein SPC_1891 [Salmonella enterica subsp. enterica ... gi\|16760727 - gi\|16760727\|ref\|NP_456344.1\| hypothetical protein STY1968 [Salmonella enterica subsp. enterica serov... gi\|207856656, gi... - gi\|207856656\|ref\|YP_002243307.1\| hypothetical protein SEN1199 [Salmonella enterica subsp. enterica s... gi\|25512734, gi\|... - gi\|25512734\|pir\|\|AF0727 conserved hypothetical protein STY1968 [imported] - Salmonella enterica subs... gi\|16765179, gi\|... - gi\|16765179\|ref\|NP_460794.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16420371\|... gi\|62128035, gi\|... - gi\|62180402\|ref\|YP_216819.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov... gi\|238912098 - gi\|238912098\|ref\|ZP_04655935.1\| hypothetical protein SentesTe_13331 [Salmonella enterica subsp. ente... gi\|56127500, gi\|... - gi\|56413243\|ref\|YP_150318.1\| hypothetical protein SPA1035 [Salmonella enterica subsp. enterica serov... gi\|205352498, gi... - gi\|205352498\|ref\|YP_002226299.1\| hypothetical protein SG1280A [Salmonella enterica subsp. enterica s... gi\|197093646, gi... - gi\|197362169\|ref\|YP_002141806.1\| hypothetical protein SSPA0965 [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=yobF] [protein=putative cytoplasmic protein] [protein_id=YP_005237780.1] [location=complement(...	2.0E-7	[1..38]	[1..38]

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Predicted Domain #1

Region A:
Residues: [1-38]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGIFSKEVL SKDVSVEYRF SADPYLSASS SNDSSLSM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits