YRC Public Data Repository - Protein Structure Prediction

Protein:	AGRP_PIG
Organism:	Sus scrofa
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGRP_PIG.

Description	E-value	Query Range	Subject Range
AGRP_BOVIN - Agouti-related protein OS=Bos taurus GN=AGRP PE=2 SV=1	184.0	[0..1]	[134..1]
gi\|9957748 - gi\|9957748\|gb\|AAG09464.1\|AF220531_1 agouti-related protein [Sus scrofa]	167.0	[0..14]	[134..1]
AGRP_MOUSE - Agouti-related protein OS=Mus musculus GN=Agrp PE=1 SV=1	159.0	[0..1]	[134..1]
AGRP - agouti related protein homolog (mouse) gi\|114663139 - gi\|114663139\|ref\|XP_001164015.1\| PREDICTED: similar to Agouti related protein [Pan troglodytes]	158.0	[0..1]	[134..1]
gi\|73957497 - gi\|73957497\|ref\|XP_853932.1\| PREDICTED: similar to Agouti-related protein precursor [Canis familiari...	156.0	[0..16]	[134..16]
gi\|109128902 - gi\|109128902\|ref\|XP_001091740.1\| PREDICTED: similar to Agouti-related protein precursor [Macaca mula...	154.0	[0..18]	[134..18]
gi\|48256953 - gi\|48256953\|gb\|AAT41659.1\| agouti-related peptide [Ovis aries]	146.0	[0..24]	[128..1]
gi\|62665164, gi\|... - gi\|62665164\|ref\|XP_574228.1\| PREDICTED: similar to Agouti-related protein precursor [Rattus norvegic...	146.0	[0..1]	[133..1]
gi\|36788207 - gi\|36788207\|emb\|CAD88211.1\| agouti-related protein precursor [Carassius auratus]	130.0	[0..23]	[128..18]

Back

Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTTMLLSCA LLLAMPTMLG AQIGLAPLEG IGRLDQALFP ELQDLGLQPP LKRTTAERAE  60
   61 EALLQQAEAK ALAEVLDPEG RKARSPRRCV RLHESCLGHQ VPCCDPCATC YCRFFNAFCY 120
  121 CRKLGTATNP CSRT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	70.376751
Match:	PF05039.3
Description:	No description for PF05039.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits