YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213615909
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Length:	207 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213615909.

Description	E-value	Query Range	Subject Range
gi\|12513212, gi\|... - gi\|15800101\|ref\|NP_286113.1\| putative DNA-binding transcriptional regulator [Escherichia coli O157:H... gi\|15829679, gi\|... - gi\|15829679\|ref\|NP_308452.1\| putative DNA-binding transcriptional regulator [Escherichia coli O157:H... gi\|170079962, gi... - gi\|170079962\|ref\|YP_001729282.1\| DNA-binding transcriptional regulator [Escherichia coli str. K-12 s... gi\|75256748 - gi\|75256748\|ref\|ZP_00728353.1\| COG2186: Transcriptional regulators [Escherichia coli E22] gi\|218350565, gi... - gi\|218693833\|ref\|YP_002401500.1\| putative DNA-binding transcriptional regulator [Escherichia coli 55... gi\|73854419, gi\|... - gi\|74310942\|ref\|YP_309361.1\| putative DNA-binding transcriptional regulator [Shigella sonnei Ss046],... gi\|16128360\|ref\|... - hypothetical protein [Escherichia coli], predicted DNA-binding transcriptional regulator [Escherichi... YAIV_ECOLI - Hypothetical protein yaiV - Escherichia coli gi\|238899665, gi... - gi\|238899665\|ref\|YP_002925461.1\| putative DNA-binding transcriptional regulator [Escherichia coli BW... gi\|85674516, gi\|... - gi\|89107246\|ref\|AP_001026.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... gi\|1786573, gi\|1... - gi\|1786573\|gb\|AAC73478.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-1... YAIV_ECO57 - Uncharacterized protein yaiV OS=Escherichia coli O157:H7 GN=yaiV PE=4 SV=1	0.0	[1..207]	[16..222]
gi\|75189443 - gi\|75189443\|ref\|ZP_00702710.1\| COG2186: Transcriptional regulators [Escherichia coli E24377A] gi\|218430752, gi... - gi\|218703655\|ref\|YP_002411174.1\| putative DNA-binding transcriptional regulator [Escherichia coli UM... gi\|218698722, gi... - gi\|218698722\|ref\|YP_002406351.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|218552934, gi... - gi\|218552934\|ref\|YP_002385847.1\| putative DNA-binding transcriptional regulator [Escherichia coli IA... gi\|209910844, gi... - gi\|209917585\|ref\|YP_002291669.1\| putative DNA-binding transcriptional regulator [Escherichia coli SE...	0.0	[1..207]	[16..222]
gi\|75209932 - gi\|75209932\|ref\|ZP_00710121.1\| COG2186: Transcriptional regulators [Escherichia coli B171]	0.0	[1..207]	[16..222]
gi\|26246374, gi\|... - gi\|26246374\|ref\|NP_752413.1\| putative DNA-binding transcriptional regulator [Escherichia coli CFT073... gi\|237707639, gi... - gi\|237707639\|ref\|ZP_04538120.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|227884624, gi... - gi\|227884624\|ref\|ZP_04002429.1\| DNA-binding transcriptional regulator [Escherichia coli 83972], gi\|2... gi\|218557284, gi... - gi\|218557284\|ref\|YP_002390197.1\| putative DNA-binding transcriptional regulator [Escherichia coli S8... gi\|91209436, gi\|... - gi\|91209436\|ref\|YP_539422.1\| putative DNA-binding transcriptional regulator [Escherichia coli UTI89]... gi\|117622638, gi... - gi\|117622638\|ref\|YP_851551.1\| putative DNA-binding transcriptional regulator [Escherichia coli APEC ...	0.0	[1..207]	[16..222]
gi\|161615449, gi... - gi\|161615449\|ref\|YP_001589414.1\| putative DNA-binding transcriptional regulator [Salmonella enterica... gi\|206707659, gi... - gi\|207855856\|ref\|YP_002242507.1\| putative DNA-binding transcriptional regulator [Salmonella enterica... lcl\|NC_016856.1_... - [gene=yaiV] [protein=putative DNA-binding transcriptional regulator] [protein_id=YP_005236055.1] [lo... gi\|16418876, gi\|... - gi\|16763754\|ref\|NP_459369.1\| putative DNA-binding transcriptional regulator [Salmonella typhimurium ... gi\|62178985, gi\|... - gi\|62178985\|ref\|YP_215402.1\| putative DNA-binding transcriptional regulator [Salmonella enterica sub... gi\|238911493 - gi\|238911493\|ref\|ZP_04655330.1\| putative DNA-binding transcriptional regulator [Salmonella enterica ...	0.0	[1..207]	[1..207]
gi\|110640636, gi... - gi\|110640636\|ref\|YP_668364.1\| putative DNA-binding transcriptional regulator [Escherichia coli 536],... gi\|190906210, gi... - gi\|191173501\|ref\|ZP_03035028.1\| hypothetical protein EcF11_1702 [Escherichia coli F11], gi\|190906210...	0.0	[1..207]	[1..207]
gi\|81244277, gi\|... - gi\|82542866\|ref\|YP_406813.1\| putative DNA-binding transcriptional regulator [Shigella boydii Sb227],...	1.0E-99	[1..207]	[16..222]
gi\|56126551, gi\|... - gi\|56412294\|ref\|YP_149369.1\| hypothetical protein SPA0020 [Salmonella enterica subsp. enterica serov... gi\|197361231, gi... - gi\|197361231\|ref\|YP_002140866.1\| hypothetical protein SSPA0018 [Salmonella enterica subsp. enterica ...	1.0E-81	[6..207]	[28..234]
gi\|213161372 - gi\|213161372\|ref\|ZP_03347082.1\| hypothetical protein Salmoneentericaenterica_15627 [Salmonella enter... gi\|213426538 - gi\|213426538\|ref\|ZP_03359288.1\| hypothetical protein SentesTyphi_13540 [Salmonella enterica subsp. e... gi\|16759014 - gi\|16759014\|ref\|NP_454631.1\| hypothetical protein STY0021 [Salmonella enterica subsp. enterica serov... gi\|25359148, gi\|... - gi\|25359148\|pir\|\|AF0504 conserved hypothetical protein STY0021 [imported] - Salmonella enterica subs... gi\|29140564, gi\|... - gi\|29140564\|ref\|NP_803906.1\| hypothetical protein t0021 [Salmonella enterica subsp. enterica serovar... gi\|213580848 - gi\|213580848\|ref\|ZP_03362674.1\| hypothetical protein SentesTyph_06384 [Salmonella enterica subsp. en... gi\|213616426 - gi\|213616426\|ref\|ZP_03372252.1\| hypothetical protein SentesTyp_18931 [Salmonella enterica subsp. ent... gi\|213648634 - gi\|213648634\|ref\|ZP_03378687.1\| hypothetical protein SentesTy_15949 [Salmonella enterica subsp. ente... gi\|213857755 - gi\|213857755\|ref\|ZP_03384726.1\| hypothetical protein SentesT_21770 [Salmonella enterica subsp. enter...	2.0E-81	[6..207]	[28..234]

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Predicted Domain #1

Region A:
Residues: [1-207]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSLNKPLQE FNRLDKCLSK HGTRFEFVND KEIICSPDES NTHTFVILEG VVSLVRGDKV  60
   61 LIGIVQAPFI FGLADGVAKK EAQYKLIAES GCIGYRLSSS QTLAIIEQNQ LWREAFCWIV 120
  121 WKSQVLELRD KQLIGNNSYD QIRATLMTMI EWDEELRSRI GVMNYIHQRT RVSRSVVAEV 180
  181 LAALRKGNYI EMNKGKLISI NRLPSEY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	1omiA
Description:	Listeriolysin regulatory protein PrfA, C-terminal domain; Listeriolysin regulatory protein PrfA, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits