YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213650372
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. J185
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213650372.

Description	E-value	Query Range	Subject Range
gi\|207859600, gi... - gi\|207859600\|ref\|YP_002246251.1\| putative innner membrane protein [Salmonella enterica subsp. enteri... gi\|205355206, gi... - gi\|205355206\|ref\|YP_002229007.1\| putative innner membrane protein [Salmonella enterica subsp. enteri... gi\|167991263, gi... - gi\|205330363\|gb\|EDZ17127.1\| inner membrane protein YjgN [Salmonella enterica subsp. enterica serovar... YJGN_SALTY - Inner membrane protein yjgN OS=Salmonella typhimurium GN=yjgN PE=3 SV=3 YJGN_SALTY - Inner membrane protein yjgN OS=Salmonella typhimurium GN=yjgN PE=3 SV=3 lcl\|NC_016856.1_... - [gene=yjgN] [protein=putative inner membrane protein] [protein_id=YP_005240799.1] [location=4728517.... YJGN_SALTY - Inner membrane protein YjgN OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjgN ...	0.0	[1..395]	[1..395]
gi\|56416246, gi\|... - gi\|56416246\|ref\|YP_153321.1\| putative innner membrane protein [Salmonella enterica subsp. enterica s... gi\|197096646, gi... - gi\|197365169\|ref\|YP_002144806.1\| putative innner membrane protein [Salmonella enterica subsp. enteri...	0.0	[1..395]	[1..395]
gi\|224470826, gi... - gi\|224586298\|ref\|YP_002640097.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|62182900, gi\|... - gi\|62182900\|ref\|YP_219317.1\| putative inner membrane protein [Salmonella enterica subsp. enterica se... gi\|238910630 - gi\|238910630\|ref\|ZP_04654467.1\| putative inner membrane protein [Salmonella enterica subsp. enterica...	0.0	[1..395]	[1..395]
gi\|91075386, gi\|... - gi\|91213812\|ref\|YP_543798.1\| putative inner membrane protein [Escherichia coli UTI89], gi\|91075386\|g... gi\|226901844, gi... - gi\|237703932\|ref\|ZP_04534413.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|117626601, gi... - gi\|117626601\|ref\|YP_859924.1\| putative inner membrane protein [Escherichia coli APEC O1], gi\|1155157...	0.0	[1..395]	[1..395]
gi\|110644616, gi... - gi\|110644616\|ref\|YP_672346.1\| putative membrane protein YjgN [Escherichia coli 536], gi\|110346208\|gb... gi\|190909002, gi... - gi\|191170778\|ref\|ZP_03032330.1\| inner membrane protein YjgN [Escherichia coli F11], gi\|190909002\|gb\|...	0.0	[1..395]	[1..395]
gi\|195937282 - gi\|195937282\|ref\|ZP_03082664.1\| hypothetical protein EscherichcoliO157_12655 [Escherichia coli O157:... gi\|208814398, gi... - gi\|208814398\|ref\|ZP_03255727.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|25391907 - pir\|\|B91283 hypothetical protein ECs5234 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|254796277, gi... - gi\|254796277\|ref\|YP_003081114.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1... YJGN_ECO57 - Inner membrane protein YjgN OS=Escherichia coli O157:H7 GN=yjgN PE=3 SV=1 gi\|15834488, gi\|... - gi\|15834488\|ref\|NP_313261.1\| hypothetical protein ECs5234 [Escherichia coli O157:H7 str. Sakai], gi\|...	0.0	[1..395]	[1..398]
gi\|31335152 - gi\|31335152\|gb\|AAP43520.1\| YjgN [Escherichia coli B] gi\|254164182, gi... - gi\|254164182\|ref\|YP_003047292.1\| conserved inner membrane protein [Escherichia coli B str. REL606], ... gi\|254290932, gi... - gi\|254290932\|ref\|YP_003056682.1\| conserved inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|251787504, gi... - gi\|251787504\|ref\|YP_003001808.1\| hypothetical protein B21_04087 [Escherichia coli BL21], gi\|24237977...	0.0	[1..395]	[1..398]
gi\|189404633, gi... - gi\|189404633\|ref\|ZP_02809912.2\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|... gi\|189363971, gi... - gi\|189402792\|ref\|ZP_02791553.2\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi... gi\|189402062, gi... - gi\|189402062\|ref\|ZP_02779844.2\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi... gi\|189010546, gi... - gi\|189010546\|ref\|ZP_02807789.2\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi... gi\|209161163, gi... - gi\|209399763\|ref\|YP_002273801.1\| hypothetical protein ECH74115_5778 [Escherichia coli O157:H7 str. E... gi\|208741192, gi... - gi\|208821069\|ref\|ZP_03261389.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|208806842, gi... - gi\|208806842\|ref\|ZP_03249179.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|189405574, gi... - gi\|189405574\|ref\|ZP_02822842.2\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|... gi\|209749496, gi... - gi\|25498004\|pir\|\|D86124 hypothetical protein yjgN [imported] - Escherichia coli (strain O157:H7, su... gi\|188014804, gi... - gi\|188025106\|ref\|ZP_02776072.2\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi... gi\|187770297, gi... - gi\|187775905\|ref\|ZP_02799030.2\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi... gi\|15804849, gi\|... - gi\|15804849\|ref\|NP_290890.1\| hypothetical protein Z5869 [Escherichia coli O157:H7 EDL933], gi\|125192...	0.0	[1..395]	[10..407]
gi\|74314736, gi\|... - gi\|74314736\|ref\|YP_313155.1\| hypothetical protein SSON_4442 [Shigella sonnei Ss046], gi\|73858213\|gb\|...	0.0	[1..395]	[1..398]
gi\|30043720, gi\|... - gi\|30065456\|ref\|NP_839627.1\| hypothetical protein S4493 [Shigella flexneri 2a str. 2457T], gi\|300437... gi\|56480553, gi\|... - gi\|56480553\|ref\|NP_709944.2\| hypothetical protein SF4232 [Shigella flexneri 2a str. 301], gi\|5638410...	0.0	[1..395]	[1..398]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNVISSKDN HNHTLVFTGK GGKYFVICLV NFLLTCITFG IYAPWAMVKC RRYIYTNMTL  60
   61 NNQPFAYKAT GGALFISVLL VFIIYIVSLS FIEHGHPGLG FTLFGLLIAI IPFMAVKGLQ 120
  121 YQAMMTSLNG VHFGFQCSMR RAWWYMFALP VLLMVALYIV LYIISLVTIA VGGLVFNIVF 180
  181 LGLLAIIGIG VINGITYSKW MTLFGNGAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [210-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGIHRFSIQV NVKTCIRGCV LAMLTLFPFA VVIGYLIAPV FTDMILLSMM GNAQAGGALI  60
   61 LQYYGQIMAC YFLYFLAIIV VTSYLYVALR NLFLNNLSLA NDSIRFHSSV TAHGMLWRLL 120
  121 VVFVISGVTL GLAYPWLKIW LVSWLAQNTQ VQGDLDSLEL TNDEKPLENS PLMWISRGIM 180
  181 PYFPFI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits