YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|221321406
Organism:	Bacillus subtilis subsp. subtilis str. SMY
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|221321406.

Description	E-value	Query Range	Subject Range
gi\|89084762, gi\|... - gi\|89100496\|ref\|ZP_01173357.1\| Dihydroneopterin aldolase [Bacillus sp. NRRL B-14911], gi\|89084762\|gb...	160.0	[0..1]	[119..1]
gi\|16799334 - gi\|16799334\|ref\|NP_469602.1\| hypothetical protein lin0257 [Listeria innocua Clip11262] gi\|16412686, gi\|... - pir\|\|AB1465 dihydroneopterin aldolase homolog folA [imported] - Listeria innocua (strain Clip11262),...	156.0	[0..1]	[120..1]
gi\|152973921, gi... - gi\|89202207\|ref\|ZP_01180935.1\| Dihydroneopterin aldolase family:Dihydroneopterin aldolase [Bacillus ...	155.0	[0..1]	[120..1]
gi\|46906458, gi\|... - gi\|46906458\|ref\|YP_012847.1\| dihydroneopterin aldolase [Listeria monocytogenes str. 4b F2365], gi\|46... gi\|255522547 - gi\|255522547\|ref\|ZP_05389784.1\| dihydroneopterin aldolase [Listeria monocytogenes FSL J1-175] gi\|254992590 - gi\|254992590\|ref\|ZP_05274780.1\| dihydroneopterin aldolase [Listeria monocytogenes FSL J2-064] gi\|254880679 - gi\|254880679\|ref\|ZP_05253389.1\| dihydroneopterin aldolase [Listeria monocytogenes FSL J2-071] gi\|254854613 - gi\|254854613\|ref\|ZP_05243961.1\| dihydroneopterin aldolase [Listeria monocytogenes FSL R2-503] gi\|133728402, gi... - gi\|254874014\|ref\|ZP_05246724.1\| dihydroneopterin aldolase [Listeria monocytogenes FSL N1-017], gi\|15... gi\|254826417 - gi\|254826417\|ref\|ZP_05231418.1\| dihydroneopterin aldolase [Listeria monocytogenes FSL J1-194] gi\|225875316, gi... - gi\|226222854\|ref\|YP_002756961.1\| dihydroneopterin aldolase [Listeria monocytogenes Clip81459], gi\|22...	155.0	[0..1]	[120..1]
gi\|153172871, gi... - gi\|254829642\|ref\|ZP_05234329.1\| hypothetical protein LmonocytogeFSL_14365 [Listeria monocytogenes FS... gi\|16409590, gi\|... - pir\|\|AB1103 dihydroneopterin aldolase homolog folA [imported] - Listeria monocytogenes (strain EGD-e... gi\|16802271 - gi\|16802271\|ref\|NP_463756.1\| hypothetical protein lmo0225 [Listeria monocytogenes EGD-e] gi\|224503818 - gi\|224503818\|ref\|ZP_03672125.1\| hypothetical protein LmonFR_15186 [Listeria monocytogenes FSL R2-561...	155.0	[0..1]	[120..1]
gi\|47097265, gi\|... - gi\|47097265\|ref\|ZP_00234825.1\| dihydroneopterin aldolase [Listeria monocytogenes str. 1/2a F6854], g... gi\|153189391, gi... - gi\|254914102\|ref\|ZP_05264114.1\| hypothetical protein LmonJ2_14992 [Listeria monocytogenes J2818], gi... gi\|254901223, gi... - gi\|254901223\|ref\|ZP_05261147.1\| hypothetical protein LmonJ_15497 [Listeria monocytogenes J0161], gi\|... gi\|133733904, gi... - gi\|254938418\|ref\|ZP_05270115.1\| hypothetical protein LmonF6_14915 [Listeria monocytogenes F6900], gi...	154.0	[0..1]	[120..1]
gi\|88946459, gi\|... - gi\|88946459\|ref\|ZP_01149537.1\| Dihydroneopterin aldolase family:Dihydroneopterin aldolase [Desulfoto...	154.0	[0..2]	[119..12]
gi\|56961896, gi\|... - gi\|56961896\|ref\|YP_173618.1\| dihydroneopterin aldolase [Bacillus clausii KSM-K16], gi\|56908130\|dbj\|B...	152.0	[0..1]	[119..1]
gi\|29893884, gi\|... - gi\|30018344\|ref\|NP_829975.1\| dihydroneopterin aldolase [Bacillus cereus ATCC 14579], gi\|29893884\|gb\|... gi\|218233912, gi... - gi\|218233912\|ref\|YP_002364923.1\| dihydroneopterin aldolase [Bacillus cereus B4264], gi\|218161869\|gb\|... gi\|206732498, gi... - gi\|206972596\|ref\|ZP_03233539.1\| dihydroneopterin aldolase [Bacillus cereus AH1134], gi\|206732498\|gb\|...	150.0	[0..1]	[119..1]
gi\|51894322, gi\|... - gi\|51894322\|ref\|YP_077013.1\| dihydroneopterin aldolase [Symbiobacterium thermophilum IAM 14863], gi\|...	149.0	[0..1]	[119..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKVYVEGME FYGYHGVFTE ENKLGQRFKV DLTAELDLSK AGQTDDLEQT INYAELYHVC  60
   61 KDIVEGEPVK LVETLAERIA GTVLGKFQPV QQCTVKVIKP DPPIPGHYKS VAIEITRKKS 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1dhnA
Description:	1.65 ANGSTROM RESOLUTION STRUCTURE OF 7,8-DIHYDRONEOPTERIN ALDOLASE FROM STAPHYLOCOCCUS AUREUS
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits