YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207342520
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	435 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207342520.

Description	E-value	Query Range	Subject Range
gi\|151946115 - gi\|151946115\|gb\|EDN64346.1\| transcriptional regulator [Saccharomyces cerevisiae YJM789] GAL80_YEAST - Galactose/lactose metabolism regulatory protein GAL80 OS=Saccharomyces cerevisiae (strain ATCC 20450... GAL80 - Transcriptional regulator involved in the repression of GAL genes in the absence of galactose; inhib... gi\|207342520 - gi\|207342520\|gb\|EDZ70263.1\| YML051Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408194 - gi\|190408194\|gb\|EDV11459.1\| galactose/lactose metabolism regulatory protein GAL80 [Saccharomyces cer...	7.0E-87	[1..435]	[1..435]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	9.0E-87	[1..435]	[1..435]
GAL80_KLULA - Galactose/lactose metabolism regulatory protein GAL80 OS=Kluyveromyces lactis (strain ATCC 8585 / CB... GAL8_KLULA, GAL8... - (Q06433) Galactose/lactose metabolism regulatory protein GAL80, Galactose/lactose metabolism regulat...	4.0E-69	[1..430]	[1..455]
gi\|7429797 - pir\|\|D71201 hypothetical protein PH1881 - Pyrococcus horikoshii gi\|3258320, gi\|1... - gi\|3258320\|dbj\|BAA31003.1\| 371aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591627\|...	9.0E-63	[13..427]	[30..368]
gi\|15613811, gi\|... - gi\|15613811\|ref\|NP_242114.1\| NADH-dependent dyhydrogenase [Bacillus halodurans C-125], gi\|10173864\|d... gi\|25493503 - pir\|\|H83805 NADH-dependent dyhydrogenase BH1248 [imported] - Bacillus halodurans (strain C-125)	2.0E-62	[16..427]	[2..340]
gi\|15964109 - gi\|15964109\|ref\|NP_384462.1\| putative oxidoreductase protein [Sinorhizobium meliloti 1021] gi\|15073285 - gi\|15073285\|emb\|CAC41793.1\| Putative oxidoreductase [Sinorhizobium meliloti 1021]	4.0E-62	[12..427]	[1..375]
gi\|4981103, gi\|1... - gi\|4981103\|gb\|AAD35670.1\|AE001733_7 lipopolysaccharide biosynthesis protein BplA [Thermotoga maritim... gi\|7462872 - pir\|\|B72359 lipopolysaccharide biosynthesis protein BplA - Thermotoga maritima (strain MSB8)	2.0E-61	[17..426]	[2..344]
gi\|16804202 - gi\|16804202\|ref\|NP_465687.1\| hypothetical protein lmo2163 [Listeria monocytogenes EGD-e] gi\|25514433, gi\|... - pir\|\|AC1345 oxidoreductase homolog lmo2163 [imported] - Listeria monocytogenes (strain EGD-e), gi\|16...	5.0E-60	[17..425]	[2..355]
gi\|5459153, gi\|1... - gi\|5459153\|emb\|CAB50639.1\| NADH dependent dyhydrogenase related protein [Pyrococcus abyssi GE5], gi\|... gi\|5459153, gi\|7... - pir\|\|A75025 NADH-dependent dyhydrogenase related protein PAB1138 - Pyrococcus abyssi (strain Orsay),...	6.0E-60	[14..427]	[1..338]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYNKRSSVS TVPNAAPIRV GFVGLNAAKG WAIKTHYPAI LQLSSQFQIT ALYSPKIETS  60
   61 IATIQRLKLS NATAFPTLES FASSSTIDMI VIAIQVASHY EVVMPLLEFS KNNPNLKYLF 120
  121 VEWALACSLD QAESIYKAAA ERGVQTIISL

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [380-404]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKIPELPSQF VMQGFDFEGF PTLMD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	1ofgA_
Description:	Glucose-fructose oxidoreductase, N-terminal domain; Glucose-fructose oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [151-379]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGRKSPYILR AKELISQGYI GDINSIEIAG NGGWYGYERP VKSPKYIYEI GNGVDLVTTT  60
   61 FGHTIDILQY MTSSYFSRIN AMVFNNIPEQ ELIDERGNRL GQRVPKTVPD HLLFQGTLLN 120
  121 GNVPVSCSFK GGKPTKKFTK NLVIDIHGTK GDLKLEGDAG FAEISNLVLY YSGTRANDFP 180
  181 LANGQQAPLD PGYDAGKEIM EVYHLRNYNA IVGNIHRLYQ SISDFHFNT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [405-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALILHRLIES VYKSNMMGST LNVSNISHYS L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	1ofgA_
Description:	Glucose-fructose oxidoreductase, N-terminal domain; Glucose-fructose oxidoreductase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits