YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|207341539
Organism:	Saccharomyces cerevisiae AWRI1631
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|207341539.

Description	E-value	Query Range	Subject Range
ESF2 - Essential nucleolar protein involved in pre-18S rRNA processing; binds to RNA and stimulates ATPase ... gi\|207341539 - gi\|207341539\|gb\|EDZ69566.1\| YNR054Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151944582 - gi\|151944582\|gb\|EDN62860.1\| 18S rRNA processing factor [Saccharomyces cerevisiae YJM789] gi\|190408948 - gi\|190408948\|gb\|EDV12213.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] ESF2_YEAST - Pre-rRNA-processing protein ESF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ESF2 PE...	3.0E-61	[1..316]	[1..316]
esf2 - U3 snoRNP-associated protein Esf2 ESF2_SCHPO - Pre-rRNA-processing protein esf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=esf2 PE=1...	2.0E-58	[3..308]	[11..310]
PABP1_BOVIN - Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 gi\|109087089 - gi\|109087089\|ref\|XP_001098239.1\| PREDICTED: poly(A) binding protein, cytoplasmic 1 isoform 2 [Macaca... gi\|123993665, gi... - gi\|168278070\|dbj\|BAG11013.1\| polyadenylate-binding protein 1 [synthetic construct], gi\|123999981\|gb\|... gi\|194036975 - gi\|194036975\|ref\|XP_001927782.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-bind... PABPC1 - poly(A) binding protein, cytoplasmic 1 gi\|73974130, gi\|... - gi\|73974178\|ref\|XP_857695.1\| PREDICTED: similar to Polyadenylate-binding protein 1 (Poly(A)-binding ...	9.0E-58	[2..312]	[188..477]
PABP1_MOUSE - Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2	1.0E-57	[2..312]	[188..477]
PABP1_RAT - Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1	1.0E-57	[2..312]	[188..477]
gi\|2665654 - gi\|2665654\|gb\|AAB88449.1\| polyadenylate binding protein [Petromyzon marinus]	1.0E-54	[3..313]	[189..484]
gi\|64970 - gi\|64970\|emb\|CAA40721.1\| polyA binding protein [Xenopus laevis]	7.0E-54	[2..313]	[188..474]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKVNSDFE DFSSDEETDQ HNVLIQTKKK ISSKDDIFSK KVEDIESENE SDIEEEQKQE  60
   61 EKEDVEQPDK ENGEKLDREV EEQASSTTSL DLKTEKLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1up1__
Description:	Nuclear ribonucleoprotein A1 (RNP A1, UP1)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [99-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QLVKSKAAKK SKHKTGVVYF SSIPPYMKPA KMRQILTRFG EVDRLFLKKE DDQKYKQRVK  60
   61 GGGNKKNKYE EGWAEFIRKR DAKLCAETLN GNIIGGKKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1up1__
Description:	Nuclear ribonucleoprotein A1 (RNP A1, UP1)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [198-265]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFYHDDILNV KYLPGFKWAD LTEQIAREND IRQAKLEMEI SQANKLNAEF IRNVEQSKMI  60
   61 QNIKNSRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	1qm9A_
Description:	Polypyrimidine tract-binding protein
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [266-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAGKEGESAD SHPHREFKQR RVETSRANAP SDIKQQSSGS KDLGNVLTNL L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.69897
Match:	1g9lA_
Description:	poly(A) binding protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits