YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|220955058, gi...
Organism:	synthetic construct
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|220955058, gi....

Description	E-value	Query Range	Subject Range
gi\|125810103\|ref... - GA20878-PA [Drosophila pseudoobscura], GA20878 [Drosophila pseudoobscura pseudoobscura] gi\|195172694, gi... - gi\|195172694\|ref\|XP_002027131.1\| GL20077 [Drosophila persimilis], gi\|194112944\|gb\|EDW34987.1\| GL2007... gi\|125810103, gi... - gi\|54636533\|gb\|EAL25936.1\| GA20878 [Drosophila pseudoobscura pseudoobscura], gi\|125810103\|ref\|XP_001...	282.0	[0..1]	[246..1]
gi\|58391015, gi\|... - gi\|58391015\|ref\|XP_318202.2\| ENSANGP00000010517 [Anopheles gambiae str. PEST], gi\|55236785\|gb\|EAA133... AGAP010298-PA - V-type H+-transporting ATPase subunit D\|protein_coding\|3R:52655893:52656940:1\|gene:AGAP010298	281.0	[0..1]	[246..1]
gi\|94469066, gi\|... - gi\|94469066\|gb\|ABF18382.1\| vacuolar H+-ATPase V1 sector subunit D [Aedes aegypti], gi\|157124332\|ref\|...	279.0	[0..1]	[246..1]
gi\|46561758 - gi\|46561758\|gb\|AAT01084.1\| putative vacuolar ATP synthase subunit D [Homalodisca coagulata]	278.0	[0..1]	[246..1]
vha-14 - Membrane-associated atpase gamma chain status:Confirmed UniProt:P34462 protein_id:CAA81600.1	276.0	[0..2]	[244..4]
VATD_CAEBR - V-type proton ATPase subunit D OS=Caenorhabditis briggsae GN=vha-14 PE=3 SV=1 gi\|157774515 - gi\|157774515\|ref\|XP_001665323.1\| hypothetical protein CBG10070 [Caenorhabditis briggsae AF16]	270.0	[0..2]	[244..5]
gi\|41055704, gi\|... - gi\|68436373\|ref\|XP_687668.1\| PREDICTED: hypothetical protein [Danio rerio], gi\|41055704\|ref\|NP_95725...	270.0	[0..1]	[246..1]
gi\|91080509, gi\|... - gi\|91080511\|ref\|XP_975872.1\| PREDICTED: similar to putative vacuolar ATP synthase subunit D isoform ...	270.0	[0..1]	[246..1]
gi\|21410966 - gi\|21410966\|gb\|AAH31002.1\| ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D [Homo sapiens]	268.0	[0..1]	[246..1]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKDRLPIF PSRGAQMLMK ARLAGAQKGH GLLKKKADAL QMRFRLILGK IIETKTLMGD  60
   61 VMKEAAFSLA EAKFTSGDIN QVVLQNVTKA QIKIRTKKDN VAGVTLPVFE SYQDGSDTYE 120
  121 LAGLARGGQQ LAKLKKNYQS AVKLLVELAS LQTSFVTLDE VIKITNRRVN AIEHVIIPRI 180
  181 DRTLAYIISE LDELEREEFY RLKKIQDKKR EARIKADAKK AELLQQGIDV RQQANILDEG 240
  241 DDDVLF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	82.677781
Match:	PF01813.8
Description:	No description for PF01813.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits