YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214000028
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214000028.

Description	E-value	Query Range	Subject Range
gi\|56480557, gi\|... - gi\|56480557\|ref\|NP_709957.2\| aspartate carbamoyltransferase regulatory subunit [Shigella flexneri 2a... PYRI_SHIFL - Aspartate carbamoyltransferase regulatory chain OS=Shigella flexneri GN=pyrI PE=3 SV=4 gi\|30043733, gi\|... - gi\|30065469\|ref\|NP_839640.1\| aspartate carbamoyltransferase regulatory subunit [Shigella flexneri 2a... PYRI_SHIF8 - Aspartate carbamoyltransferase regulatory chain OS=Shigella flexneri serotype 5b (strain 8401) GN=py...	1.0E-68	[1..153]	[1..153]
PYRI_SHIDS - Aspartate carbamoyltransferase regulatory chain OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	1.0E-68	[1..153]	[1..153]
PYRI_ECOL6 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... PYRI_ECOK1 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O1:K1 / APEC GN=pyrI PE=3 SV=1 PYRI_ECO57 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O157:H7 GN=pyrI PE=3 SV=2 gi\|124500748, gi... - gi\|124528306\|ref\|ZP_01699630.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli... EG10811 - aspartate carbamoyltransferase, regulatory subunit / Aspartate carbamoyltransferase, regulatory subu... gi\|15804835, gi\|... - gi\|15804835\|ref\|NP_290876.1\| aspartate carbamoyltransferase regulatory subunit [Escherichia coli O15... gi\|227836275, gi... - gi\|227886702\|ref\|ZP_04004507.1\| aspartate carbamoyltransferase regulatory subunit [Escherichia coli ... gi\|237703920, gi... - gi\|237703920\|ref\|ZP_04534401.1\| aspartate carbomoyltransferase regulatory subunit [Escherichia sp. 3... PYRI_ECOBW - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli (strain K12 / MC4100 / BW2952) G... gi\|251787493, gi... - gi\|251787493\|ref\|YP_003001797.1\| hypothetical protein B21_04076 [Escherichia coli BL21], gi\|24237976... gi\|253775130, gi... - gi\|254290921\|ref\|YP_003056671.1\| aspartate carbamoyltransferase regulatory subunit [Escherichia coli... gi\|226840373, gi... - gi\|254037267\|ref\|ZP_04871344.1\| aspartate carbamoyltransferase subunit regulatory [Escherichia sp. 1... gi\|254164171, gi... - gi\|254164171\|ref\|YP_003047281.1\| aspartate carbamoyltransferase regulatory subunit [Escherichia coli... gi\|254796265, gi... - gi\|254796265\|ref\|YP_003081102.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia col... PYRI_ECOLI - Aspartate carbamoyltransferase regulatory chain - Escherichia coli PYRI_ECOUT - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli (strain UTI89 / UPEC) GN=pyrI PE... EG10811 - aspartate carbamoyltransferase, regulatory subunit / Aspartate carbamoyltransferase, regulatory subu... gi\|15834475, gi\|... - gi\|15834475\|ref\|NP_313248.1\| aspartate carbamoyltransferase regulatory subunit [Escherichia coli O15... PYRI_ECOL5 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G... PYRI_ECO55 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli (strain 55989 / EAEC) GN=pyrI PE... PYRI_ECO81 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O81 (strain ED1a) GN=pyrI PE=3 S... PYRI_ECOLU - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExP... sp\|B7UQQ4\|PYRI_ECO27 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... PYRI_ECO5E - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... gi\|208739691, gi... - gi\|208819568\|ref\|ZP_03259888.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli... PYRI_ECO27 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... PYRI_ECOSE - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli (strain SE11) GN=pyrI PE=3 SV=1 PYRI_ESCF3 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia fergusonii (strain ATCC 35469 / DSM 1... gi\|217322590, gi... - gi\|217326369\|ref\|ZP_03442453.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli... PYRI_ECO45 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=p... PYRI_ECO8A - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O8 (strain IAI1) GN=pyrI PE=3 SV... PYRI_SHIBS - Aspartate carbamoyltransferase regulatory chain OS=Shigella boydii serotype 4 (strain Sb227) GN=pyrI... gi\|89110962, gi\|... - gi\|89110962\|ref\|AP_004742.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli st... gi\|193069784, gi... - gi\|75235447\|ref\|ZP_00719655.1\| COG1781: Aspartate carbamoyltransferase, regulatory subunit [Escheric... gi\|75242368, gi\|... - gi\|75242368\|ref\|ZP_00726130.1\| COG1781: Aspartate carbamoyltransferase, regulatory subunit [Escheric... gi\|194415413, gi... - gi\|75212201\|ref\|ZP_00712241.1\| COG1781: Aspartate carbamoyltransferase, regulatory subunit [Escheric... gi\|191167228, gi... - gi\|75229615\|ref\|ZP_00716154.1\| COG1781: Aspartate carbamoyltransferase, regulatory subunit [Escheric... PYRI_SHISS - Aspartate carbamoyltransferase regulatory chain OS=Shigella sonnei (strain Ss046) GN=pyrI PE=3 SV=1 PYRI_ECOL6 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O6 GN=pyrI PE=3 SV=2 gi\|193063701, gi... - gi\|75258346\|ref\|ZP_00729777.1\| COG1781: Aspartate carbamoyltransferase, regulatory subunit [Escheric... gi\|188494685, gi... - gi\|75515481\|ref\|ZP_00737638.1\| COG1781: Aspartate carbamoyltransferase, regulatory subunit [Escheric... PYRI_ECO24 - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O139:H28 (strain E24377A / ETEC)... PYRI_ECOHS - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O9:H4 (strain HS) GN=pyrI PE=3 S... PYRI_ECOLC - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / C... gi\|194423343, gi... - gi\|83586727\|ref\|ZP_00925359.1\| COG1781: Aspartate carbamoyltransferase, regulatory subunit [Escheric... PYRI_SHIB3 - Aspartate carbamoyltransferase regulatory chain OS=Shigella boydii serotype 18 (strain CDC 3083-94 /... gi\|168784890, gi... - gi\|189375042\|gb\|EDU93458.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli O15... gi\|188999784, gi... - gi\|188999784\|gb\|EDU68770.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli O15... PYRI_ECODH - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli (strain K12 / DH10B) GN=pyrI PE=... gi\|189379557, gi... - gi\|189379557\|gb\|EDU97973.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli O15... gi\|195937270 - gi\|195937270\|ref\|ZP_03082652.1\| aspartate carbamoyltransferase regulatory subunit [Escherichia coli ... PYRI_ECOSM - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=pyrI... gi\|208812427, gi... - gi\|208812427\|ref\|ZP_03253756.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli... gi\|208807623, gi... - gi\|208807623\|ref\|ZP_03249960.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli... gi\|188014803, gi... - gi\|188014803\|gb\|EDU52925.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli O15... gi\|168760495, gi... - gi\|189369008\|gb\|EDU87424.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli O15... gi\|168754822, gi... - gi\|189357809\|gb\|EDU76228.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli O15... gi\|168774038, gi... - gi\|187770243\|gb\|EDU34087.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli O15... gi\|189363926, gi... - gi\|189363926\|gb\|EDU82345.1\| aspartate carbamoyltransferase, regulatory subunit [Escherichia coli O15...	1.0E-68	[1..153]	[1..153]
gi\|83569383, gi\|... - gi\|83569383\|ref\|ZP_00920837.1\| COG1781: Aspartate carbamoyltransferase, regulatory subunit [Shigella... PYRI_ECO7I - Aspartate carbamoyltransferase regulatory chain OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=...	2.0E-68	[1..153]	[1..153]
gi\|229665, gi\|57... - gi\|809199\|pdb\|1AT1\|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And Phosphonoacetam...	4.0E-68	[1..153]	[1..153]
gi\|168821120, gi... - gi\|205342274\|gb\|EDZ29038.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... PYRI_SALPB - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... PYRI_SALNS - Aspartate carbamoyltransferase regulatory chain OS=Salmonella newport (strain SL254) GN=pyrI PE=3 SV... PYRI_SALCH - Aspartate carbamoyltransferase regulatory chain OS=Salmonella choleraesuis GN=pyrI PE=3 SV=1 PYRI_SALHS - Aspartate carbamoyltransferase regulatory chain OS=Salmonella heidelberg (strain SL476) GN=pyrI PE=3... PYRI_SALTY - Aspartate carbamoyltransferase regulatory chain OS=Salmonella typhimurium (strain LT2 / SGSC1412 / A... PYRI_SALA4 - Aspartate carbamoyltransferase regulatory chain OS=Salmonella agona (strain SL483) GN=pyrI PE=3 SV=1 PYRI_SALTY - Aspartate carbamoyltransferase regulatory chain OS=Salmonella typhimurium GN=pyrI PE=3 SV=3 PYRI_SALCH - Aspartate carbamoyltransferase regulatory chain OS=Salmonella choleraesuis (strain SC-B67) GN=pyrI P... gi\|205323918, gi... - gi\|205323918\|gb\|EDZ11757.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... gi\|205330375, gi... - gi\|205330375\|gb\|EDZ17139.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... gi\|205336982, gi... - gi\|205336982\|gb\|EDZ23746.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... gi\|168464665, gi... - gi\|195632611\|gb\|EDX51065.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enterica ... PYRI_SALPB - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SP... lcl\|NC_016856.1_... - [gene=pyrI] [protein=aspartate carbamoyltransferase regulatory subunit] [protein_id=YP_005240781.1] ... PYRI_SALTY - Aspartate carbamoyltransferase regulatory chain OS=Salmonella typhimurium GN=pyrI PE=3 SV=3 PYRI_SALCH - Aspartate carbamoyltransferase regulatory chain OS=Salmonella choleraesuis GN=pyrI PE=3 SV=1 gi\|197263000, gi... - gi\|197263000\|ref\|ZP_03163074.1\| aspartate carbamoyltransferase, regulatory subunit [Salmonella enter... PYRI_SALG2 - Aspartate carbamoyltransferase regulatory chain OS=Salmonella gallinarum (strain 287/91 / NCTC 13346... PYRI_SALEP - Aspartate carbamoyltransferase regulatory chain OS=Salmonella enteritidis PT4 (strain P125109) GN=py... PYRI_SALPC - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi C (strain RKS4594) GN=pyrI P...	2.0E-67	[1..153]	[1..153]
PYRI_SALPA - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi A GN=pyrI PE=3 SV=1 PYRI_SALPA - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42... PYRI_SALPK - Aspartate carbamoyltransferase regulatory chain OS=Salmonella paratyphi A (strain AKU_12601) GN=pyrI...	2.0E-67	[1..153]	[1..153]
gi\|6013453 - gi\|6013453\|gb\|AAF01339.1\|AF190426_3 aspartate transcarbamylase regulatory subunit [Pantoea agglomera...	2.0E-66	[1..153]	[1..153]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHDNKLQVE AIKCGTVIDH IPAQVGFKLL SLFKLTETDQ RITIGLNLPS GEMGRKDLIK  60
   61 IENTFLTDEQ VNQLALYAPQ ATVNRIDNYD VVGKSRPSLP ERINNVLVCP NSNCISHAEP 120
  121 VSSSFAVKKR ANDIALKCKY CEKEFSHNVV LAN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.0
Match:	1d09B
Description:	Aspartate carbamoyltransferase; Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
aspartate carbamoyltransferase activity	1.31217076713969	bayes_pls_golite062009
binding	0.616301266767101	bayes_pls_golite062009
carboxyl- or carbamoyltransferase activity	0.557470758521584	bayes_pls_golite062009
catalytic activity	0.364912245438605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: