YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|195577885, gi...
Organism:	Drosophila simulans
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195577885, gi....

Description	E-value	Query Range	Subject Range
gi\|114627384 - gi\|114627384\|ref\|XP_001153928.1\| PREDICTED: similar to L7a protein [Pan troglodytes]	154.0	[0..11]	[124..216]
gi\|167863651, gi... - gi\|170040078\|ref\|XP_001847839.1\| 13 kDa ribonucleoprotein-associated protein [Culex quinquefasciatus... gi\|108881137, gi... - gi\|94469036\|gb\|ABF18367.1\| 60S ribosomal protein 15.5kD/SNU13 [Aedes aegypti], gi\|157135810\|ref\|XP_0...	148.0	[0..1]	[127..1]
gi\|147906322, gi... - gi\|28302201\|gb\|AAH46579.1\| Hoip-prov protein [Xenopus laevis], gi\|147906322\|ref\|NP_001080724.1\| NHP2...	147.0	[0..1]	[127..1]
NH2L1_XENTR - NHP2-like protein 1 OS=Xenopus tropicalis GN=snu13 PE=2 SV=1	147.0	[0..1]	[127..1]
gi\|54644690, gi\|... - gi\|54644690\|gb\|EAL33430.1\| GA17798-PA [Drosophila pseudoobscura], gi\|125985207\|ref\|XP_001356367.1\| G...	146.0	[0..2]	[127..2]
gi\|21070334 - gi\|21070334\|gb\|AAM34260.1\|AF508309_1 ribosomal protein L7a [Equus caballus]	146.0	[0..11]	[124..70]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEEVNPKAF PLADAQLTAK IMNLLQQALN YNQLRKGANE ATKTLNRGLA DIVVLAGDAE  60
   61 PIEILLHLPL LCEDKNVPYV FVRSKQALGR ACGVSRPIVA CSVTTNEGSQ LKSQITSIQQ 120
  121 EIERLLV

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Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1zwzA
Description:	No description for 1zwzA was found.

Predicted functions:

Term	Confidence	Notes
	5.75333813716704	bayes_pls_golite062009
RNA binding	5.39762744650785	bayes_pls_golite062009
snoRNA binding	4.95788328272916	bayes_pls_golite062009
structural constituent of ribosome	3.68798692352408	bayes_pls_golite062009
structural molecule activity	3.12718364266877	bayes_pls_golite062009
mRNA binding	2.62944559104613	bayes_pls_golite062009
nucleic acid binding	2.39301463005357	bayes_pls_golite062009
binding	2.34187530323842	bayes_pls_golite062009
protein binding	0.381324299701367	bayes_pls_golite062009
catalytic activity	0.264002643439785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: