YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|214000425
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|214000425.

Description	E-value	Query Range	Subject Range
gi\|16766299, gi\|... - gi\|16766299\|ref\|NP_461914.1\| hypothetical protein STM2997 [Salmonella typhimurium LT2], gi\|16421546\|... gi\|56414944, gi\|... - gi\|56414944\|ref\|YP_152019.1\| hypothetical protein SPA2862 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=ppdC] [protein=hypothetical protein] [protein_id=YP_005239117.1] [location=complement(3175908.... gi\|197095349, gi... - gi\|197363872\|ref\|YP_002143509.1\| hypothetical protein SSPA2665 [Salmonella enterica subsp. enterica ... gi\|199603671, gi... - gi\|200386573\|ref\|ZP_03213185.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. e... gi\|205328461, gi... - gi\|205328461\|gb\|EDZ15225.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. enter... gi\|168463848, gi... - gi\|195633170\|gb\|EDX51584.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. enter...	2.0E-39	[1..106]	[1..106]
gi\|206710063, gi... - gi\|207858260\|ref\|YP_002244911.1\| hypothetical protein SEN2839 [Salmonella enterica subsp. enterica s... gi\|205273718, gi... - gi\|205353937\|ref\|YP_002227738.1\| hypothetical protein SG2905 [Salmonella enterica subsp. enterica se... gi\|197938434, gi... - gi\|198243918\|ref\|YP_002216969.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. ... gi\|197249404, gi... - gi\|197249404\|ref\|YP_002147905.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. ... gi\|168820278, gi... - gi\|205342798\|gb\|EDZ29562.1\| prepilin peptidase-dependent protein C [Salmonella enterica subsp. enter... gi\|62129138, gi\|... - gi\|62181505\|ref\|YP_217922.1\| hypothetical protein SC2935 [Salmonella enterica subsp. enterica serova...	5.0E-39	[1..106]	[1..106]
gi\|253974652, gi... - gi\|254162751\|ref\|YP_003045859.1\| hypothetical protein ECB_02671 [Escherichia coli B str. REL606], gi... gi\|254289510, gi... - gi\|254289510\|ref\|YP_003055258.1\| hypothetical protein ECD_02671 [Escherichia coli BL21(DE3)], gi\|253... gi\|170018934, gi... - gi\|170018934\|ref\|YP_001723888.1\| hypothetical protein EcolC_0892 [Escherichia coli ATCC 8739], gi\|16... gi\|251786098, gi... - gi\|251786098\|ref\|YP_003000402.1\| hypothetical protein B21_02632 [Escherichia coli BL21], gi\|24237837... gi\|170082391, gi... - gi\|170082391\|ref\|YP_001731711.1\| hypothetical protein ECDH10B_2993 [Escherichia coli str. K-12 subst... gi\|238862916, gi... - gi\|238901958\|ref\|YP_002927754.1\| hypothetical protein BWG_2558 [Escherichia coli BW2952], gi\|2388629... gi\|218701537, gi... - gi\|218701537\|ref\|YP_002409166.1\| hypothetical protein ECIAI39_3242 [Escherichia coli IAI39], gi\|2183... gi\|218433414, gi... - gi\|218706317\|ref\|YP_002413836.1\| hypothetical protein ECUMN_3150 [Escherichia coli UMN026], gi\|21843... PPDC_ECOLI - Prepilin peptidase-dependent protein C precursor - Escherichia coli EG11154 - putative prepilin peptidase-dependent protein / Predicted prepilin peptidase-dependent DUF3728 famil... gi\|194417418, gi... - gi\|83569183\|ref\|ZP_00920641.1\| hypothetical protein Sdys1_01002533 [Shigella dysenteriae 1012], gi\|1... gi\|83584780, gi\|... - gi\|83584780\|ref\|ZP_00923442.1\| hypothetical protein Ecol1_01004012 [Escherichia coli 101-1], gi\|1944... gi\|157067955, gi... - gi\|75196791\|ref\|ZP_00706861.1\| hypothetical protein EcolH_01002603 [Escherichia coli HS], gi\|1571622... gi\|85675639, gi\|... - gi\|89109606\|ref\|AP_003386.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|124500339, gi... - gi\|124528811\|ref\|ZP_01700035.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500339\|gb... EG11154 - putative prepilin peptidase-dependent protein / Predicted prepilin peptidase-dependent DUF3728 famil...	1.0E-37	[1..106]	[1..106]
gi\|218366604, gi... - gi\|218559835\|ref\|YP_002392748.1\| hypothetical protein ECS88_3118 [Escherichia coli S88], gi\|21836660... gi\|218428513, gi... - gi\|218690949\|ref\|YP_002399161.1\| hypothetical protein ECED1_3279 [Escherichia coli ED1a], gi\|2184285... gi\|26249252, gi\|... - gi\|26249252\|ref\|NP_755292.1\| hypothetical protein c3417 [Escherichia coli CFT073], gi\|26109659\|gb\|AA... gi\|117625076, gi... - gi\|117625076\|ref\|YP_854064.1\| hypothetical protein APECO1_3682 [Escherichia coli APEC O1], gi\|115514... gi\|215488141, gi... - gi\|215488141\|ref\|YP_002330572.1\| hypothetical protein E2348C_3092 [Escherichia coli O127:H6 str. E23... gi\|110344582, gi... - gi\|110642990\|ref\|YP_670720.1\| hypothetical protein ECP_2835 [Escherichia coli 536], gi\|110344582\|gb\|... gi\|226899556, gi... - gi\|237706516\|ref\|ZP_04536997.1\| prepilin peptidase dependent protein C [Escherichia sp. 3_2_53FAA], ... gi\|91212218, gi\|... - gi\|91212218\|ref\|YP_542204.1\| hypothetical protein UTI89_C3224 [Escherichia coli UTI89], gi\|91073792\|... gi\|227888386, gi... - gi\|227888386\|ref\|ZP_04006191.1\| prepilin peptidase-dependent protein C [Escherichia coli 83972], gi\|...	2.0E-37	[1..106]	[1..106]
gi\|187428534, gi... - gi\|75175493\|ref\|ZP_00695711.1\| hypothetical protein SboyB_01004445 [Shigella boydii BS512], gi\|18773... gi\|81246535, gi\|... - gi\|82545124\|ref\|YP_409071.1\| hypothetical protein SBO_2713 [Shigella boydii Sb227], gi\|81246535\|gb\|A...	2.0E-37	[1..106]	[1..106]
gi\|82778199, gi\|... - gi\|82778199\|ref\|YP_404548.1\| hypothetical protein SDY_3040 [Shigella dysenteriae Sd197], gi\|81242347...	4.0E-37	[1..106]	[1..106]
gi\|75228187, gi\|... - gi\|75228187\|ref\|ZP_00714849.1\| hypothetical protein EcolB7_01003479 [Escherichia coli B7A], gi\|19116...	7.0E-37	[1..106]	[1..106]
gi\|254594161, gi... - gi\|254794761\|ref\|YP_003079598.1\| hypothetical protein ECSP_3775 [Escherichia coli O157:H7 str. TW143... gi\|13363152, gi\|... - gi\|15832934\|ref\|NP_311707.1\| prepilin peptidase dependent protein C [Escherichia coli O157:H7], gi\|1... gi\|209761096, gi... - pir\|\|B85934 prepilin peptidase dependent protein C [imported] - Escherichia coli (strain O157:H7, su... gi\|208728246, gi... - gi\|208808445\|ref\|ZP_03250782.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str... gi\|15803342, gi\|... - gi\|15803342\|ref\|NP_289375.1\| hypothetical protein Z4140 [Escherichia coli O157:H7 EDL933], gi\|125173... gi\|195936424 - gi\|195936424\|ref\|ZP_03081806.1\| hypothetical protein EscherichcoliO157_08162 [Escherichia coli O157:... gi\|189376211, gi... - gi\|189376211\|gb\|EDU94627.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|168788085, gi... - gi\|189372143\|gb\|EDU90559.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|217320017, gi... - gi\|217327650\|ref\|ZP_03443733.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str... gi\|209396653, gi... - gi\|209396653\|ref\|YP_002272286.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 st... gi\|208820371, gi... - gi\|208820371\|ref\|ZP_03260691.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str... gi\|208733853, gi... - gi\|208812576\|ref\|ZP_03253905.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str... gi\|189354928, gi... - gi\|189354928\|gb\|EDU73347.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|13363152, gi\|... - gi\|15832934\|ref\|NP_311707.1\| hypothetical protein ECs3680 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168751037, gi... - gi\|188014856\|gb\|EDU52978.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|189003612, gi... - gi\|189003612\|gb\|EDU72598.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|168777656, gi... - gi\|187767143\|gb\|EDU30987.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|168766794, gi... - gi\|189363612\|gb\|EDU82031.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC... gi\|189365396, gi... - gi\|189365396\|gb\|EDU83812.1\| prepilin peptidase-dependent protein C [Escherichia coli O157:H7 str. EC...	1.0E-36	[1..106]	[1..106]
gi\|229679357, gi... - gi\|229903587\|ref\|ZP_04518700.1\| putative prepilin peptidase dependent protein [Yersinia pestis Nepal... gi\|108806486, gi... - gi\|108806486\|ref\|YP_650402.1\| putative prepilin peptidase dependent protein [Yersinia pestis Antiqua... gi\|229837725, gi... - gi\|229837725\|ref\|ZP_04457885.1\| putative prepilin peptidase dependent protein [Yersinia pestis Pesto... gi\|229697312, gi... - gi\|229840946\|ref\|ZP_04461105.1\| putative prepilin peptidase dependent protein [Yersinia pestis biova... gi\|22127043, gi\|... - gi\|22127043\|ref\|NP_670466.1\| hypothetical protein y3167 [Yersinia pestis KIM], gi\|21960094\|gb\|AAM867... gi\|25510028 - pir\|\|AI0124 probable prepilin peptidase dependent protein YPO1017 [imported] - Yersinia pestis (stra... gi\|16121318, gi\|... - gi\|218928186\|ref\|YP_002346061.1\| putative prepilin peptidase dependent protein [Yersinia pestis CO92... gi\|45442646, gi\|... - gi\|45442646\|ref\|NP_994185.1\| putative prepilin peptidase dependent protein [Yersinia pestis biovar M... gi\|229843046, gi... - gi\|229843046\|ref\|ZP_04463196.1\| putative prepilin peptidase dependent protein [Yersinia pestis biova... gi\|149366981, gi... - gi\|149366981\|ref\|ZP_01889014.1\| putative prepilin peptidase dependent protein [Yersinia pestis CA88-...	1.0E-31	[5..104]	[23..132]
gi\|51590625, gi\|... - gi\|51597343\|ref\|YP_071534.1\| putative prepilin peptidase dependent protein [Yersinia pseudotuberculo... Q667G4\|Q667G4_YERPS - Putative prepilin peptidase dependent protein - Yersinia pseudotuberculosis gi\|162351571, gi... - gi\|77634242\|ref\|ZP_00796347.1\| hypothetical protein YpesA_01002409 [Yersinia pestis Angola], gi\|1624... gi\|117672713, gi... - gi\|77630062\|ref\|ZP_00792648.1\| hypothetical protein YpseI_01001419 [Yersinia pseudotuberculosis IP 3... gi\|167468469 - gi\|167468469\|ref\|ZP_02333173.1\| prepilin peptidase dependent protein [Yersinia pestis FV-1] gi\|165927143, gi... - gi\|165927143\|ref\|ZP_02222975.1\| prepilin peptidase dependent protein homolog [Yersinia pestis biovar... gi\|166011528, gi... - gi\|166011528\|ref\|ZP_02232426.1\| prepilin peptidase dependent protein homolog [Yersinia pestis biovar... gi\|165939310, gi... - gi\|89103325\|ref\|ZP_01175908.1\| hypothetical protein Ypesb_01002674 [Yersinia pestis biovar Orientali... gi\|145210676, gi... - gi\|145598980\|ref\|YP_001163056.1\| prepilin peptidase dependent protein [Yersinia pestis Pestoides F],... gi\|166962260, gi... - gi\|167419519\|ref\|ZP_02311272.1\| prepilin peptidase dependent protein homolog [Yersinia pestis biovar... gi\|167425380, gi... - gi\|167425380\|ref\|ZP_02317133.1\| prepilin peptidase dependent protein homolog [Yersinia pestis biovar... gi\|166206177, gi... - gi\|166212885\|ref\|ZP_02238920.1\| prepilin peptidase dependent protein homolog [Yersinia pestis biovar... gi\|167050424, gi... - gi\|167399716\|ref\|ZP_02305234.1\| prepilin peptidase dependent protein homolog [Yersinia pestis biovar...	2.0E-31	[5..104]	[8..117]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHPLNFQRG FSLPEVLVAM VLMVMIVTAL SGYQRVLMHT FALRHQYLQI WRQAWQQTAL  60
   61 YPFSPADGWN ANRMQTTQSG CVSISVTMVS PSGRQGQMTR LHCPNR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.784	d.52.1	Alpha-lytic protease prodomain
View	Download	0.710	b.34.5	Translation proteins SH3-like domain
View	Download	0.690	c.47.2	RNA 3'-terminal phosphate cyclase, RPTC, insert domain
View	Download	0.601	b.122.1	PUA domain-like
View	Download	0.570	d.50.2	Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits