YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213999235
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-3139
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213999235.

Description	E-value	Query Range	Subject Range
gi\|42519467, gi\|... - gi\|42519467\|ref\|NP_965397.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus johnsonii N...	6.0E-73	[6..302]	[1..293]
gi\|56413324, gi\|... - gi\|56413324\|ref\|YP_150399.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Salmonella e... gi\|197093726, gi... - gi\|197362249\|ref\|YP_002141886.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Salmonel...	1.0E-72	[1..302]	[1..302]
gi\|23002796 - gi\|23002796\|ref\|ZP_00046469.1\| COG1210: UDP-glucose pyrophosphorylase [Lactobacillus gasseri] gi\|227521298, gi... - gi\|227521298\|ref\|ZP_03951347.1\| UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus gasseri ... gi\|116629360, gi... - gi\|23002796\|ref\|ZP_00046469.1\| hypothetical protein Lgas_03000721 [Lactobacillus gasseri ATCC 33323]...	2.0E-72	[6..294]	[1..284]
gi\|227903507, gi... - gi\|227903507\|ref\|ZP_04021312.1\| UTP-glucose-1-phosphate uridylyltransferase [Lactobacillus acidophil... gi\|58254267, gi\|... - gi\|58336950\|ref\|YP_193535.1\| UTP-glucose-1-phosphate uridylyltransferase [Lactobacillus acidophilus ...	1.0E-71	[6..301]	[1..290]
gi\|189372394, gi... - gi\|189372394\|gb\|EDU90810.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 st... gi\|168801549, gi... - gi\|189376336\|gb\|EDU94752.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 st... gi\|169755326, gi... - gi\|170020398\|ref\|YP_001725352.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escheric... gi\|170080865, gi... - gi\|170080865\|ref\|YP_001730185.1\| glucose-1-phosphate uridylyltransferase [Escherichia coli str. K-12... gi\|194417493, gi... - gi\|194434262\|ref\|ZP_03066528.1\| UTP-glucose-1-phosphate uridylyltransferase [Shigella dysenteriae 10... gi\|195939123 - gi\|195939123\|ref\|ZP_03084505.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escherich... gi\|208808071, gi... - gi\|208808071\|ref\|ZP_03250408.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H... gi\|208732356, gi... - gi\|208815708\|ref\|ZP_03256887.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H... gi\|188015097, gi... - gi\|188015097\|gb\|EDU53219.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 st... GALU_SHIFL - UTP--glucose-1-phosphate uridylyltransferase OS=Shigella flexneri GN=galU PE=1 SV=2 gi\|189354989, gi... - gi\|189354989\|gb\|EDU73408.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 st... GALU_ECOLI - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (UDP-glucose pyrophosphorylase) (UDPGP) (A... gi\|168764358, gi... - gi\|189365619\|gb\|EDU84035.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 st... gi\|24112632, gi\|... - gi\|24112632\|ref\|NP_707142.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Shigella fle... gi\|189360060, gi... - gi\|189360060\|gb\|EDU78479.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 st... GALU_ECOL6 - UTP--glucose-1-phosphate uridylyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 ... gi\|187767774, gi... - gi\|187767774\|gb\|EDU31618.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 st... gi\|218704757, gi... - gi\|218704757\|ref\|YP_002412276.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escheric... gi\|208737601, gi... - gi\|208822116\|ref\|ZP_03262435.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H... gi\|209396952, gi... - gi\|209396952\|ref\|YP_002270167.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:... gi\|209911736, gi... - gi\|209918477\|ref\|YP_002292561.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escheric... gi\|215486472, gi... - gi\|215486472\|ref\|YP_002328903.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escheric... gi\|217318623, gi... - gi\|217328196\|ref\|ZP_03444278.1\| UTP-glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H... gi\|218553788, gi... - gi\|218553788\|ref\|YP_002386701.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escheric... gi\|218364933, gi... - gi\|218558164\|ref\|YP_002391077.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escheric... gi\|218694749, gi... - gi\|218694749\|ref\|YP_002402416.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escheric... gi\|89108082, gi\|... - gi\|89108082\|ref\|AP_001862.1\| glucose-1-phosphate uridylyltransferase [Escherichia coli str. K-12 sub... gi\|91072031, gi\|... - gi\|91210457\|ref\|YP_540443.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escherichia ... gi\|13361203, gi\|... - gi\|15830992\|ref\|NP_309765.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escherichia ... gi\|110343057, gi... - gi\|110641465\|ref\|YP_669195.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escherichia... gi\|110805239, gi... - gi\|110805239\|ref\|YP_688759.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Shigella fl... gi\|30041004, gi\|... - gi\|30062756\|ref\|NP_836927.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Shigella fle... GALU_ECO57 - UTP--glucose-1-phosphate uridylyltransferase OS=Escherichia coli O157:H7 GN=galU PE=3 SV=2 EG11319 - glucose-1-phosphate uridylyltransferase / Glucose-1-P uridylyltransferase; also called UDP-glucose p... gi\|117623451, gi... - gi\|117623451\|ref\|YP_852364.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escherichia... gi\|15801464, gi\|... - gi\|15801464\|ref\|NP_287481.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escherichia ... gi\|124500614, gi... - gi\|124528382\|ref\|ZP_01699692.1\| UTP-glucose-1-phosphate uridylyltransferase GalU [Escherichia coli B... EG11319 - glucose-1-phosphate uridylyltransferase / Glucose-1-P uridylyltransferase; also called UDP-glucose p... gi\|82776577, gi\|... - gi\|82776577\|ref\|YP_402926.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Shigella dys... GALU_ECOL6 - UTP--glucose-1-phosphate uridylyltransferase OS=Escherichia coli O6 GN=galU PE=3 SV=2 gi\|73855904, gi\|... - gi\|74312427\|ref\|YP_310846.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Shigella son... gi\|254592106, gi... - gi\|254792706\|ref\|YP_003077543.1\| glucose-1-phosphate uridylyltransferase [Escherichia coli O157:H7 s... gi\|191166632, gi... - gi\|75230206\|ref\|ZP_00716707.1\| COG1210: UDP-glucose pyrophosphorylase [Escherichia coli B7A], gi\|191... gi\|254161317, gi... - gi\|254161317\|ref\|YP_003044425.1\| glucose-1-phosphate uridylyltransferase [Escherichia coli B str. RE... gi\|194426113, gi... - gi\|75212669\|ref\|ZP_00712667.1\| COG1210: UDP-glucose pyrophosphorylase [Escherichia coli B171], gi\|19... gi\|254288125, gi... - gi\|254288125\|ref\|YP_003053873.1\| glucose-1-phosphate uridylyltransferase [Escherichia coli BL21(DE3)... gi\|75195385, gi\|... - gi\|75195385\|ref\|ZP_00705455.1\| COG1210: UDP-glucose pyrophosphorylase [Escherichia coli HS], gi\|1571... gi\|242377015, gi... - gi\|251784742\|ref\|YP_002999046.1\| hypothetical protein B21_01222 [Escherichia coli BL21], gi\|24237701... gi\|157079172, gi... - gi\|75190286\|ref\|ZP_00703553.1\| COG1210: UDP-glucose pyrophosphorylase [Escherichia coli E24377A], gi... gi\|238900469, gi... - gi\|238900469\|ref\|YP_002926265.1\| glucose-1-phosphate uridylyltransferase [Escherichia coli BW2952], ... gi\|188492043, gi... - gi\|75511734\|ref\|ZP_00734363.1\| COG1210: UDP-glucose pyrophosphorylase [Escherichia coli 53638], gi\|1... gi\|227836540, gi... - gi\|227886336\|ref\|ZP_04004141.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Escherich... gi\|75257141, gi\|... - gi\|75257141\|ref\|ZP_00728677.1\| COG1210: UDP-glucose pyrophosphorylase [Escherichia coli E22], gi\|193... gi\|191171032, gi... - gi\|75242037\|ref\|ZP_00725831.1\| COG1210: UDP-glucose pyrophosphorylase [Escherichia coli F11], gi\|191... gi\|192956709, gi... - gi\|75235256\|ref\|ZP_00719493.1\| COG1210: UDP-glucose pyrophosphorylase [Escherichia coli E110019], gi... gi\|194437099, gi... - gi\|83587376\|ref\|ZP_00926004.1\| COG1210: UDP-glucose pyrophosphorylase [Escherichia coli 101-1], gi\|1...	1.0E-70	[1..302]	[1..302]
gi\|187428522, gi... - gi\|75179169\|ref\|ZP_00699187.1\| COG1210: UDP-glucose pyrophosphorylase [Shigella boydii BS512], gi\|18... gi\|82544313, gi\|... - gi\|82544313\|ref\|YP_408260.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Shigella boy...	3.0E-70	[1..302]	[1..302]
gi\|170715822, gi... - gi\|170715822\|gb\|EDT28004.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens CPE... gi\|170712761, gi... - gi\|170712761\|gb\|EDT24943.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens B s... gi\|18144169, gi\|... - gi\|18309492\|ref\|NP_561426.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens st... gi\|110674009, gi... - gi\|110799362\|ref\|YP_694942.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens A...	6.0E-70	[4..297]	[1..288]
gi\|49611783, gi\|... - gi\|50121257\|ref\|YP_050424.1\| UTP--glucose-1-phosphate uridylyltransferase subunit GalU [Pectobacteri...	8.0E-70	[1..302]	[1..302]
gi\|150388137, gi... - gi\|77686850\|ref\|ZP_00802168.1\| UTP--glucose-1-phosphate uridylyltransferase, bacterial and archaeal ...	1.0E-69	[5..297]	[1..286]
gi\|110684193, gi... - gi\|110803692\|ref\|YP_697798.1\| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens S...	3.0E-69	[4..297]	[1..288]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALNSKVKK AVIPVAGLGT RMLPATKAIP KEMLPLVDKP LIQYVVNECI AAGITEIVLV  60
   61 THSSKNSIEN HFDTSFELEA MLEKRVKRQL LEEVQSICPP HVTIMQVRQG LAKGLGHAVL 120
  121 CAHPVVGNEP VAVILPDVIL DEYESDLSQD NLAEMIRRFD ETGNSQIMVE PVEDVTAYGV 180
  181 VDCKGVELAP GESVPMVGVV EKPKADVAPS NLAIVGRYVL SADIWALLAK TPPGAGDEIQ 240
  241 LTDAIDMLIE KETVEAYHMK GKSHDCGNKL GYMQAFVEYG IRHNSLGAEF KAWLEEEMGI 300
  301 KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	72.221849
Match:	2e3dA
Description:	No description for 2e3dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits