YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213052276
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E00-7866
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213052276.

Description	E-value	Query Range	Subject Range
gi\|224586207, gi... - gi\|224586207\|ref\|YP_002640006.1\| putative negative regulator [Salmonella enterica subsp. enterica se... gi\|205360093, gi... - gi\|205360093\|ref\|ZP_02834507.2\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|205327229, gi... - gi\|205358148\|ref\|ZP_02576074.2\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|198243076, gi... - gi\|198243076\|ref\|YP_002218251.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica... gi\|197244125, gi... - gi\|197265870\|ref\|ZP_03165944.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|195873714, gi... - gi\|195873714\|ref\|ZP_02698652.2\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|194445441, gi... - gi\|194445441\|ref\|YP_002043622.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica... gi\|62130446, gi\|... - gi\|62182813\|ref\|YP_219230.1\| putative negative regulator [Salmonella enterica subsp. enterica serova...	165.0	[0..2]	[141..23]
NSRR_SALCH - HTH-type transcriptional repressor NsrR OS=Salmonella choleraesuis (strain SC-B67) GN=nsrR PE=3 SV=2 NSRR_SALPA - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=nsr... NSRR_SALPB - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=n... NSRR_SALTY - HTH-type transcriptional repressor NsrR OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7007... NSRR_SALG2 - HTH-type transcriptional repressor NsrR OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nsr... NSRR_SALEP - HTH-type transcriptional repressor NsrR OS=Salmonella enteritidis PT4 (strain P125109) GN=nsrR PE=3 ... lcl\|NC_016856.1_... - [gene=yjeB] [protein=transcriptional repressor NsrR] [protein_id=YP_005240680.1] [location=4623431..... gi\|200387819, gi... - gi\|200387819\|ref\|ZP_03214431.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... gi\|204927167, gi... - gi\|204927167\|ref\|ZP_03218369.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALA4 - HTH-type transcriptional repressor NsrR OS=Salmonella agona (strain SL483) GN=nsrR PE=3 SV=1 NSRR_SALPK - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi A (strain AKU_12601) GN=nsrR PE=3 SV... gi\|194470152, gi... - gi\|194470152\|ref\|ZP_03076136.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALSV - HTH-type transcriptional repressor NsrR OS=Salmonella schwarzengrund (strain CVM19633) GN=nsrR PE=3 ... gi\|205348036, gi... - gi\|205348036\|gb\|EDZ34667.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... NSRR_SALHS - HTH-type transcriptional repressor NsrR OS=Salmonella heidelberg (strain SL476) GN=nsrR PE=3 SV=1 gi\|197287648, gi... - gi\|197287648\|gb\|EDY27039.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... gi\|168245155, gi... - gi\|205336063\|gb\|EDZ22827.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... gi\|205321871, gi... - gi\|205321871\|gb\|EDZ09710.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... gi\|168231405, gi... - gi\|205334382\|gb\|EDZ21146.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica sero... NSRR_SALPA - HTH-type transcriptional repressor NsrR OS=Salmonella paratyphi A GN=nsrR PE=3 SV=1 NSRR_SALCH - HTH-type transcriptional repressor nsrR OS=Salmonella choleraesuis GN=nsrR PE=3 SV=2 NSRR_SALTY - HTH-type transcriptional repressor nsrR OS=Salmonella typhimurium GN=nsrR PE=3 SV=1 NSRR_SALPB - HTH-type transcriptional repressor nsrR OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=n... NSRR_SALCH - HTH-type transcriptional repressor NsrR OS=Salmonella choleraesuis GN=nsrR PE=3 SV=2 gi\|238910525 - gi\|238910525\|ref\|ZP_04654362.1\| transcriptional repressor NsrR [Salmonella enterica subsp. enterica ... NSRR_SALTY - HTH-type transcriptional repressor NsrR OS=Salmonella typhimurium GN=nsrR PE=3 SV=1	164.0	[0..1]	[141..1]
gi\|77973969, gi\|... - gi\|77973969\|ref\|ZP_00829512.1\| COG1959: Predicted transcriptional regulator [Yersinia frederiksenii ...	162.0	[0..1]	[141..1]
gi\|49237250, gi\|... - gi\|83590489\|ref\|YP_430498.1\| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica ATCC...	162.0	[0..1]	[136..1]
gi\|89102913 - gi\|89102913\|ref\|ZP_01175515.1\| COG1959: Predicted transcriptional regulator [Yersinia pestis biovar ... NSRR_YERPS - HTH-type transcriptional repressor NsrR OS=Yersinia pseudotuberculosis GN=nsrR PE=3 SV=1 NSRR_YERPA - HTH-type transcriptional repressor NsrR OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nsrR PE=3... NSRR_YERPN - HTH-type transcriptional repressor NsrR OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=nsrR PE=... gi\|229706323, gi... - gi\|229836639\|ref\|ZP_04456805.1\| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A],... gi\|150260577, gi... - gi\|150260577\|ref\|ZP_01917305.1\| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125], gi\|149289... gi\|229840251, gi... - gi\|229840251\|ref\|ZP_04460410.1\| DNA-binding transcriptional regulator [Yersinia pestis biovar Orient... gi\|229690639, gi... - gi\|229842329\|ref\|ZP_04462484.1\| DNA-binding transcriptional regulator [Yersinia pestis biovar Orient... gi\|167470114 - gi\|167470114\|ref\|ZP_02334818.1\| nitrite-sensitive repressor NsrR [Yersinia pestis FV-1] gi\|161511445 - gi\|161511445\|ref\|NP_991928.2\| transcriptional repressor NsrR [Yersinia pestis biovar Microtus str. 9... gi\|77632977 - gi\|77632977\|ref\|ZP_00795138.1\| COG1959: Predicted transcriptional regulator [Yersinia pestis Angola] NSRR_YERP3 - HTH-type transcriptional repressor NsrR OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 3175... NSRR_YERPS - HTH-type transcriptional repressor NsrR OS=Yersinia pseudotuberculosis serotype I (strain IP32953) G... NSRR_YERPE - HTH-type transcriptional repressor NsrR OS=Yersinia pestis GN=nsrR PE=3 SV=1 gi\|115346193, gi... - gi\|218927582\|ref\|YP_002345457.1\| transcriptional repressor NsrR [Yersinia pestis CO92], gi\|16120714\|... gi\|161484881 - gi\|161484881\|ref\|NP_667973.2\| transcriptional repressor NsrR [Yersinia pestis KIM]	162.0	[0..1]	[141..1]
NSRR_ECO81 - HTH-type transcriptional repressor NsrR OS=Escherichia coli O81 (strain ED1a) GN=nsrR PE=3 SV=1 NSRR_ECO45 - HTH-type transcriptional repressor NsrR OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nsrR PE=3... NSRR_ECO7I - HTH-type transcriptional repressor NsrR OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=nsrR PE=... NSRR_ECO55 - HTH-type transcriptional repressor NsrR OS=Escherichia coli (strain 55989 / EAEC) GN=nsrR PE=3 SV=1 NSRR_ECOLU - HTH-type transcriptional repressor NsrR OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=n... EG11212 - nitric oxide-sensitive repressor for NO regulon / Nitric oxide-sensitive repressor; regulates hmp, y... sp\|B7UQI7\|NSRR_ECO27 - HTH-type transcriptional repressor nsrR OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nsrR... gi\|189374986, gi... - gi\|189374986\|gb\|EDU93402.1\| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC869], gi... gi\|189368884, gi... - gi\|189368884\|gb\|EDU87300.1\| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC4501], g... gi\|89110898, gi\|... - gi\|89110898\|ref\|AP_004678.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... NSRR_ECODH - HTH-type transcriptional repressor NsrR OS=Escherichia coli (strain K12 / DH10B) GN=nsrR PE=3 SV=1 NSRR_SHIBS - HTH-type transcriptional repressor NsrR OS=Shigella boydii serotype 4 (strain Sb227) GN=nsrR PE=3 SV... gi\|189376056, gi... - gi\|189376056\|gb\|EDU94472.1\| transcriptional repressor NsrR [Escherichia coli O157:H7 str. EC508], gi... gi\|194417189, gi... - gi\|194434604\|ref\|ZP_03066861.1\| transcriptional repressor NsrR [Shigella dysenteriae 1012], gi\|19441... NSRR_ECOSM - HTH-type transcriptional repressor NsrR OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nsrR PE=3 SV... NSRR_SHIFL - HTH-type transcriptional repressor NsrR OS=Shigella flexneri GN=nsrR PE=3 SV=1 gi\|217321417, gi... - gi\|217325196\|ref\|ZP_03441280.1\| transcriptional repressor NsrR [Escherichia coli O157:H7 str. TW1458... gi\|24054861, gi\|... - gi\|24115533\|ref\|NP_710043.1\| transcriptional repressor NsrR [Shigella flexneri 2a str. 301], gi\|2405... NSRR_ECO27 - HTH-type transcriptional repressor NsrR OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nsrR... gi\|193070883, gi... - gi\|75234273\|ref\|ZP_00718661.1\| COG1959: Predicted transcriptional regulator [Escherichia coli E11001... NSRR_ECOK1 - HTH-type transcriptional repressor NsrR OS=Escherichia coli O1:K1 / APEC GN=nsrR PE=3 SV=1 gi\|191165643, gi... - gi\|75231229\|ref\|ZP_00717636.1\| COG1959: Predicted transcriptional regulator [Escherichia coli B7A], ... gi\|75212273, gi\|... - gi\|75212273\|ref\|ZP_00712313.1\| COG1959: Predicted transcriptional regulator [Escherichia coli B171],... NSRR_SHIDS - HTH-type transcriptional repressor NsrR OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=nsrR PE... NSRR_SHISS - HTH-type transcriptional repressor NsrR OS=Shigella sonnei (strain Ss046) GN=nsrR PE=3 SV=1 gi\|193066007, gi... - gi\|75255905\|ref\|ZP_00727637.1\| COG1959: Predicted transcriptional regulator [Escherichia coli E22], ... NSRR_ECOL6, YJEB... - (P0AF64) Protein yjeB, HTH-type transcriptional repressor NsrR OS=Escherichia coli O6 GN=nsrR PE=3 S... gi\|75235874, gi\|... - gi\|75242433\|ref\|ZP_00726195.1\| COG1959: Predicted transcriptional regulator [Escherichia coli F11], ... YJEB_ECOLI, NSRR... - (P0AF63) Protein yjeB, HTH-type transcriptional repressor nsrR - Escherichia coli gi\|227836352, gi... - gi\|227886779\|ref\|ZP_04004584.1\| transcriptional repressor NsrR [Escherichia coli 83972], gi\|22783635... NSRR_ECOBW - HTH-type transcriptional repressor NsrR OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=nsrR P... NSRR_ECOL6 - HTH-type transcriptional repressor NsrR OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPE... gi\|30065550, gi\|... - gi\|30065550\|ref\|NP_839721.1\| transcriptional repressor NsrR [Shigella flexneri 2a str. 2457T], gi\|30... NSRR_ECO57 - HTH-type transcriptional repressor NsrR OS=Escherichia coli O157:H7 GN=nsrR PE=3 SV=1 EG11212 - nitric oxide-sensitive repressor for NO regulon / Nitric oxide-sensitive repressor; regulates hmp, y... gi\|15804767, gi\|... - gi\|15804767\|ref\|NP_290808.1\| transcriptional repressor NsrR [Escherichia coli O157:H7 EDL933], gi\|12... NSRR_ECOUT - HTH-type transcriptional repressor NsrR OS=Escherichia coli (strain UTI89 / UPEC) GN=nsrR PE=3 SV=1 gi\|15834408, gi\|... - gi\|15834408\|ref\|NP_313181.1\| transcriptional repressor NsrR [Escherichia coli O157:H7 str. Sakai], g... NSRR_ECOL5 - HTH-type transcriptional repressor NsrR OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nsrR P... NSRR_SHIF8 - HTH-type transcriptional repressor NsrR OS=Shigella flexneri serotype 5b (strain 8401) GN=nsrR PE=3 ...	161.0	[0..1]	[141..1]
gi\|22124550, gi\|... - gi\|22124550\|ref\|NP_667973.1\| hypothetical protein y0636 [Yersinia pestis KIM], gi\|21957349\|gb\|AAM842... gi\|45440389, gi\|... - gi\|45440389\|ref\|NP_991928.1\| Predicted transcriptional regulator [Yersinia pestis biovar Microtus st...	161.0	[0..2]	[141..19]
NSRR_SHIB3 - HTH-type transcriptional repressor NsrR OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) ...	161.0	[0..1]	[141..1]
gi\|162352146, gi... - gi\|162419331\|ref\|YP_001605273.1\| transcriptional repressor NsrR [Yersinia pestis Angola], gi\|1623521... gi\|165926673, gi... - gi\|165926673\|ref\|ZP_02222505.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis ... gi\|165915645, gi... - gi\|165936529\|ref\|ZP_02225097.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis ... gi\|165989214, gi... - gi\|166011855\|ref\|ZP_02232753.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str... gi\|166214016, gi... - gi\|166214016\|ref\|ZP_02240051.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str... gi\|167400661, gi... - gi\|167400661\|ref\|ZP_02306170.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua str... gi\|167418774, gi... - gi\|167418774\|ref\|ZP_02310527.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis ... gi\|167057411, gi... - gi\|167423241\|ref\|ZP_02314994.1\| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Mediaevalis... gi\|170026007, gi... - gi\|170026007\|ref\|YP_001722512.1\| transcriptional repressor NsrR [Yersinia pseudotuberculosis YPIII],... gi\|186696817, gi... - gi\|186893791\|ref\|YP_001870903.1\| transcriptional repressor NsrR [Yersinia pseudotuberculosis PB1/+],... gi\|108813452, gi... - gi\|108813452\|ref\|YP_649219.1\| hypothetical protein YPN_3292 [Yersinia pestis Nepal516], gi\|108777100... gi\|108781808, gi... - gi\|108809895\|ref\|YP_653811.1\| hypothetical protein YPA_3905 [Yersinia pestis Antiqua], gi\|108781808\|... gi\|117675078 - gi\|117675078\|ref\|ZP_01498136.1\| hypothetical protein YpseI_02003310 [Yersinia pseudotuberculosis IP ... gi\|145600842, gi... - gi\|145600842\|ref\|YP_001164918.1\| transcriptional repressor NsrR [Yersinia pestis Pestoides F], gi\|14...	160.0	[0..2]	[141..15]
gi\|251787427, gi... - gi\|251787427\|ref\|YP_003001731.1\| hypothetical protein B21_04007 [Escherichia coli BL21], gi\|24237970... gi\|124500679, gi... - gi\|124528237\|ref\|ZP_01699561.1\| transcriptional regulator, BadM/Rrf2 family [Escherichia coli B], gi... gi\|253976008, gi... - gi\|254164107\|ref\|YP_003047215.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... gi\|253980164, gi... - gi\|254290857\|ref\|YP_003056605.1\| predicted DNA-binding transcriptional regulator [Escherichia coli B... NSRR_ECO8A - HTH-type transcriptional repressor NsrR OS=Escherichia coli O8 (strain IAI1) GN=nsrR PE=3 SV=1 NSRR_ECOSE - HTH-type transcriptional repressor NsrR OS=Escherichia coli (strain SE11) GN=nsrR PE=3 SV=1 NSRR_ECOHS - HTH-type transcriptional repressor NsrR OS=Escherichia coli O9:H4 (strain HS) GN=nsrR PE=3 SV=1 NSRR_ECO24 - HTH-type transcriptional repressor NsrR OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nsrR... gi\|194439542, gi... - gi\|83585084\|ref\|ZP_00923737.1\| COG1959: Predicted transcriptional regulator [Escherichia coli 101-1]... NSRR_ECOLC - HTH-type transcriptional repressor NsrR OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) G...	159.0	[0..1]	[141..1]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLTSFTDYG LRALIYMASL PDGRMTSISE VTEVYDVSRN HMVKIINQLS RAGFVTAVRG  60
   61 KNGGIRLGKP ANTICIGDVV RELEPLSLVN CSSEFCHITP ACRLKQALSK AVQSFLKELD 120
  121 NYTLADLVEE NQPLYKLLLV E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.154902
Match:	1ylfA
Description:	X-ray crystal structure of BC1842 protein from Bacillus cereus, a member of the Rrf2 family of putative transcription regulators.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits