YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213612470
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. E98-2068
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213612470.

Description	E-value	Query Range	Subject Range
LPLA_SALTY - Lipoate-protein ligase A OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=lplA PE=... lcl\|NC_016856.1_... - [gene=lplA] [protein=lipoate-protein ligase A] [protein_id=YP_005240921.1] [location=complement(4844... gi\|197244278, gi... - gi\|197266023\|ref\|ZP_03166097.1\| lipoate-protein ligase A [Salmonella enterica subsp. enterica serova... LPLA_SALTY - Lipoate-protein ligase A OS=Salmonella typhimurium GN=lplA PE=3 SV=1 LPLA_SALTY - Lipoate-protein ligase A OS=Salmonella typhimurium GN=lplA PE=3 SV=1 gi\|167989818, gi... - gi\|205331409\|gb\|EDZ18173.1\| lipoate-protein ligase A [Salmonella enterica subsp. enterica serovar 4,... gi\|205336596, gi... - gi\|205336596\|gb\|EDZ23360.1\| lipoate-protein ligase A [Salmonella enterica subsp. enterica serovar He... LPLA_SALHS - Lipoate-protein ligase A OS=Salmonella heidelberg (strain SL476) GN=lplA PE=3 SV=1	0.0	[1..338]	[1..338]
LPLA_SALPA - Lipoate-protein ligase A OS=Salmonella paratyphi A GN=lplA PE=3 SV=1 LPLA_SALPA - Lipoate-protein ligase A OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=lplA PE=3 SV=1 LPLA_SALPK - Lipoate-protein ligase A OS=Salmonella paratyphi A (strain AKU_12601) GN=lplA PE=3 SV=1	0.0	[1..338]	[1..338]
LPLA_ECOUT - Lipoate-protein ligase A OS=Escherichia coli (strain UTI89 / UPEC) GN=lplA PE=3 SV=1 LPLA_ECOK1 - Lipoate-protein ligase A OS=Escherichia coli O1:K1 / APEC GN=lplA PE=3 SV=1	0.0	[1..338]	[1..338]
gi\|227837954, gi... - gi\|227885125\|ref\|ZP_04002930.1\| lipoate-protein ligase A [Escherichia coli 83972], gi\|227837954\|gb\|E... LPLA_ECOL6 - Lipoate-protein ligase A OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=lplA PE=3... LPLA_ECOL6 - Lipoate-protein ligase A OS=Escherichia coli O6 GN=lplA PE=3 SV=3	0.0	[1..338]	[1..338]
gi\|191167404, gi... - gi\|75229445\|ref\|ZP_00715995.1\| COG0095: Lipoate-protein ligase A [Escherichia coli B7A], gi\|19116740... LPLA_ECOHS - Lipoate-protein ligase A OS=Escherichia coli O9:H4 (strain HS) GN=lplA PE=3 SV=1	0.0	[1..338]	[1..338]
gi\|194439301, gi... - gi\|83585293\|ref\|ZP_00923941.1\| COG0095: Lipoate-protein ligase A [Escherichia coli 101-1], gi\|194439... LPLA_SHISS - Lipoate-protein ligase A OS=Shigella sonnei (strain Ss046) GN=lplA PE=3 SV=1	0.0	[1..338]	[1..338]
LPLA_ECOL5 - Lipoate-protein ligase A OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=lplA PE=3 SV=1 gi\|191173166, gi... - gi\|75239552\|ref\|ZP_00723522.1\| COG0095: Lipoate-protein ligase A [Escherichia coli F11], gi\|19117316...	0.0	[1..338]	[1..338]
LPLA_ECO57 - Lipoate-protein ligase A OS=Escherichia coli O157:H7 GN=lplA PE=3 SV=2 gi\|195937657 - gi\|195937657\|ref\|ZP_03083039.1\| lipoate-protein ligase A [Escherichia coli O157:H7 str. EC4024]	0.0	[1..338]	[1..338]
gi\|25497293, gi\|... - pir\|\|C86138 probable lipoate-protein ligase A Z5988 [imported] - Escherichia coli (strain O157:H7, s... gi\|15804958, gi\|... - gi\|15804958\|ref\|NP_291000.1\| lipoate-protein ligase A [Escherichia coli O157:H7 EDL933], gi\|12519413... gi\|15834599, gi\|... - gi\|15834599\|ref\|NP_313372.1\| lipoate-protein ligase A [Escherichia coli O157:H7], gi\|13364823\|dbj\|BA... gi\|209160717, gi... - gi\|209399317\|ref\|YP_002273907.1\| protein smp precursor [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|254796382, gi... - gi\|254796382\|ref\|YP_003081219.1\| putative lipoate-protein ligase A [Escherichia coli O157:H7 str. TW... gi\|217320954, gi... - gi\|217324733\|ref\|ZP_03440817.1\| protein smp precursor [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|189405597, gi... - gi\|189405597\|ref\|ZP_02822967.2\| protein smp precursor [Escherichia coli O157:H7 str. EC508], gi\|1893... gi\|208807122, gi... - gi\|208807122\|ref\|ZP_03249459.1\| protein smp precursor [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|208733311, gi... - gi\|208812034\|ref\|ZP_03253363.1\| protein smp precursor [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|208739646, gi... - gi\|208819523\|ref\|ZP_03259843.1\| protein smp precursor [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|189356110, gi... - gi\|189402353\|ref\|ZP_02781813.2\| protein smp precursor [Escherichia coli O157:H7 str. EC4401], gi\|189... gi\|189363979, gi... - gi\|189402794\|ref\|ZP_02791676.2\| protein smp precursor [Escherichia coli O157:H7 str. EC4486], gi\|189... gi\|189367001, gi... - gi\|189404204\|ref\|ZP_02787747.2\| protein smp precursor [Escherichia coli O157:H7 str. EC4501], gi\|189... gi\|189374913, gi... - gi\|189404619\|ref\|ZP_02810038.2\| protein smp precursor [Escherichia coli O157:H7 str. EC869], gi\|1893... gi\|187767992, gi... - gi\|187776280\|ref\|ZP_02801641.2\| protein smp precursor [Escherichia coli O157:H7 str. EC4196], gi\|187... gi\|188025097, gi... - gi\|188025097\|ref\|ZP_02775997.2\| protein smp precursor [Escherichia coli O157:H7 str. EC4113], gi\|188... gi\|189010377, gi... - gi\|189010377\|ref\|ZP_02806684.2\| protein smp precursor [Escherichia coli O157:H7 str. EC4076], gi\|189... gi\|15834599, gi\|... - gi\|15834599\|ref\|NP_313372.1\| unknown domain/lipoate-protein ligase A fusion protein [Escherichia col...	0.0	[1..338]	[225..562]
LPLA_SHIBS - Lipoate-protein ligase A OS=Shigella boydii serotype 4 (strain Sb227) GN=lplA PE=3 SV=1 LPLA_SHIB3 - Lipoate-protein ligase A OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=lplA PE=3 SV...	0.0	[1..338]	[1..338]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTLRLLISD SYDPWFNLAV EECIFRQMPA TQRVLFLWRN ADTVVIGRAQ NPWKECNTRR  60
   61 MEEDNVRLAR RSSGGGAVFH DLGNTCFTFM AGKPEYDKTI STHIVLAALN SLGVMADASG 120
  121 RNDLVVKTPD GDRKVSGSAY RETKDRGFHH GTLLLNADLS RLANYLNPDK KKLAAKGITS 180
  181 VRSRVANLTE LLPGITHEQV CQAVTEAFFA HYGERIDAEV ISPDKTPDLP NFTETFARQS 240
  241 SWEWNFGQAP AFSHLLDERF TWGGVELHFD VEKGVITRAQ AFTDSLNPAP LEALAGRLQG 300
  301 CQYRADKLQE TCEALIATFP EQESELRELA NWVAGAVR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	1x2gA
Description:	Crystal Structure of Lipate-Protein Ligase A from Escherichia coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits