YRC Public Data Repository - Protein Structure Prediction

Protein:	UBIG_COXB2
Organism:	Coxiella burnetii CbuG_Q212
Length:	234 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBIG_COXB2.

Description	E-value	Query Range	Subject Range
UBIG_COXBN - Ubiquinone biosynthesis O-methyltransferase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=ubiG P... gi\|94491372, gi\|... - gi\|94491372\|ref\|ZP_01298585.1\| hypothetical protein CburD_01001500 [Coxiella burnetii Dugway 7E9-12]...	206.0	[0..1]	[234..1]
UBIG_THIDA - Ubiquinone biosynthesis O-methyltransferase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=ubi...	186.0	[0..5]	[234..1]
UBIG_PSEAB - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ubiG PE... gi\|107102701 - gi\|107102701\|ref\|ZP_01366619.1\| hypothetical protein PaerPA_01003767 [Pseudomonas aeruginosa PACS2] gi\|126195237, gi... - gi\|84326079\|ref\|ZP_00974109.1\| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol met... gi\|84319998, gi\|... - gi\|84319998\|ref\|ZP_00968384.1\| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol met...	185.0	[0..5]	[234..1]
gi\|45520389, gi\|... - gi\|91775929\|ref\|YP_545685.1\| 3-demethylubiquinone-9 3-methyltransferase [Methylobacillus flagellatus...	184.0	[0..7]	[233..2]
UBIG_PSEA7 - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=ubiG PE=3 SV=1	184.0	[0..5]	[234..1]
gi\|49082032 - gi\|49082032\|gb\|AAT50416.1\| PA3171 [synthetic construct]	184.0	[0..5]	[234..1]
UBIG_PSEAE - 3-demethylubiquinone-9 3-methyltransferase OS=Pseudomonas aeruginosa GN=ubiG PE=3 SV=1 UBIG_PSEAE - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C...	183.0	[0..5]	[234..1]
UBIG_XANAC - 3-demethylubiquinone-9 3-methyltransferase OS=Xanthomonas axonopodis pv. citri GN=ubiG PE=3 SV=1 UBIG_XANAC - Ubiquinone biosynthesis O-methyltransferase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=ubiG...	183.0	[0..5]	[233..9]
UBIG_XANC5 - Ubiquinone biosynthesis O-methyltransferase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10)...	183.0	[0..5]	[233..9]
gi\|28868948, gi\|... - gi\|28868948\|ref\|NP_791567.1\| 3-demethylubiquinone-9 3-methyltransferase [Pseudomonas syringae pv. to...	183.0	[0..1]	[234..1]

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Predicted Domain #1

Region A:
Residues: [1-234]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSEQNIDK EELAKFSDLA QDWWNPAGKM KPLHLINPVR LKYIEQQITL KGKHVLDVGC  60
   61 GGGLLSEALA KHGAIVTGVD MSESLIDVAK NHAEQQQLNI NYQCQDIEIL TKDAQRFDII 120
  121 TCMELLEHVP DPQRMIKNCA ALIKPGGKLF FSTINRNFKA YLYTIVGAEY VFNLLPKGTH 180
  181 DYAQFIRPSE LTQWAESGGL RLLDITGIHY HPLKNEFDLS RDVSVNYLAC FTHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	1vl5A
Description:	Crystal structure of hypothetical protein (BH2331) from Bacillus halodurans at 1.95 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
binding	0.109975487409217	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: