YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213028754
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. 404ty
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213028754.

Description	E-value	Query Range	Subject Range
YCCT_SALCH - UPF0319 protein yccT OS=Salmonella choleraesuis GN=yccT PE=3 SV=1 YCCT_SALPC - UPF0319 protein YccT OS=Salmonella paratyphi C (strain RKS4594) GN=yccT PE=3 SV=1 gi\|204320308, gi... - gi\|204930849\|ref\|ZP_03221722.1\| protein YccT [Salmonella enterica subsp. enterica serovar Javiana st... YCCT_SALNS - UPF0319 protein YccT OS=Salmonella newport (strain SL254) GN=yccT PE=3 SV=1 YCCT_SALCH - UPF0319 protein YccT OS=Salmonella choleraesuis (strain SC-B67) GN=yccT PE=3 SV=1 YCCT_SALCH - UPF0319 protein yccT OS=Salmonella choleraesuis GN=yccT PE=3 SV=1	9.0E-74	[1..220]	[1..220]
YCCT_SALPA - UPF0319 protein YccT OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=yccT PE=3 SV=1 YCCT_SALPA - UPF0319 protein yccT OS=Salmonella paratyphi A GN=yccT PE=3 SV=1 YCCT_SALPK - UPF0319 protein YccT OS=Salmonella paratyphi A (strain AKU_12601) GN=yccT PE=3 SV=1	2.0E-72	[1..220]	[1..220]
gi\|168758920, gi... - gi\|189354355\|gb\|EDU72774.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188014663, gi... - gi\|188014663\|gb\|EDU52785.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189001155, gi... - gi\|189001155\|gb\|EDU70141.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|168777447, gi... - gi\|187767334\|gb\|EDU31178.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189376554, gi... - gi\|189376554\|gb\|EDU94970.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168787397, gi... - gi\|189372636\|gb\|EDU91052.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... EG13722 - UPF0319 family protein / UPF0319 family protein, function unknown YCCT_ECOLI - UPF0319 protein yccT precursor - Escherichia coli YCCT_SHIFL - UPF0319 protein YccT OS=Shigella flexneri GN=yccT PE=3 SV=1 YCCT_ECOL6 - UPF0319 protein YccT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yccT PE=3 SV=... gi\|24112377, gi\|... - gi\|24112377\|ref\|NP_706887.1\| hypothetical protein SF0966 [Shigella flexneri 2a str. 301], gi\|2405124... gi\|217321737, gi... - gi\|217325516\|ref\|ZP_03441600.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YCCT_ECO27 - UPF0319 protein YccT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yccT PE=3 SV=1 YCCT_ECO45 - UPF0319 protein YccT OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yccT PE=3 SV=1 YCCT_ECO8A - UPF0319 protein YccT OS=Escherichia coli O8 (strain IAI1) GN=yccT PE=3 SV=1 YCCT_ECO7I - UPF0319 protein YccT OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yccT PE=3 SV=1 YCCT_ECO81 - UPF0319 protein YccT OS=Escherichia coli O81 (strain ED1a) GN=yccT PE=3 SV=1 YCCT_ECOLU - UPF0319 protein YccT OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yccT PE=3 SV=1 YCCT_ECOSM - UPF0319 protein YccT OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yccT PE=3 SV=1 YCCT_ECODH - UPF0319 protein YccT OS=Escherichia coli (strain K12 / DH10B) GN=yccT PE=3 SV=1 gi\|208728576, gi... - gi\|208808775\|ref\|ZP_03251112.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195935151 - gi\|195935151\|ref\|ZP_03080533.1\| hypothetical protein EscherichcoliO157_01627 [Escherichia coli O157:... gi\|208737542, gi... - gi\|208822057\|ref\|ZP_03262376.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208815872, gi... - gi\|208815872\|ref\|ZP_03257051.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... YCCT_ECOSE - UPF0319 protein YccT OS=Escherichia coli (strain SE11) GN=yccT PE=3 SV=1 YCCT_ECO5E - UPF0319 protein YccT OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yccT PE=3 SV=1 gi\|227884076, gi... - gi\|227884076\|ref\|ZP_04001881.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783882... gi\|237707051, gi... - gi\|237707051\|ref\|ZP_04537532.1\| yccT [Escherichia sp. 3_2_53FAA], gi\|226898261\|gb\|EEH84520.1\| yccT [... YCCT_ECOBW - UPF0319 protein YccT OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yccT PE=3 SV=1 gi\|251784506, gi... - gi\|251784506\|ref\|YP_002998810.1\| hypothetical protein B21_00975 [Escherichia coli BL21], gi\|24237677... gi\|253977193, gi... - gi\|254287886\|ref\|YP_003053634.1\| hypothetical protein ECD_00968 [Escherichia coli BL21(DE3)], gi\|253... gi\|254161078, gi... - gi\|254161078\|ref\|YP_003044186.1\| hypothetical protein ECB_00968 [Escherichia coli B str. REL606], gi... YCCT_ECO57 - UPF0319 protein YccT OS=Escherichia coli O157:H7 GN=yccT PE=3 SV=1 gi\|192956638, gi... - gi\|75235198\|ref\|ZP_00719440.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|254792164, gi... - gi\|254792164\|ref\|YP_003077001.1\| hypothetical protein ECSP_1070 [Escherichia coli O157:H7 str. TW143... gi\|30062503, gi\|... - gi\|30062503\|ref\|NP_836674.1\| hypothetical protein S1032 [Shigella flexneri 2a str. 2457T], gi\|300407... gi\|191172440, gi... - gi\|75240583\|ref\|ZP_00724500.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|15800823, gi\|... - gi\|15800823\|ref\|NP_286839.1\| hypothetical protein Z1315 [Escherichia coli O157:H7 EDL933], gi\|125141... gi\|194411739, gi... - gi\|75208521\|ref\|ZP_00708839.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... EG13722 - UPF0319 family protein / UPF0319 family protein, function unknown gi\|190903385, gi... - gi\|75230239\|ref\|ZP_00716736.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... YCCT_SHIDS - UPF0319 protein YccT OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=yccT PE=3 SV=1 YCCT_SHIBS - UPF0319 protein YccT OS=Shigella boydii serotype 4 (strain Sb227) GN=yccT PE=3 SV=1 gi\|192925667, gi... - gi\|75255124\|ref\|ZP_00727011.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... YCCT_SHISS - UPF0319 protein YccT OS=Shigella sonnei (strain Ss046) GN=yccT PE=3 SV=1 YCCT_SHIB3 - UPF0319 protein YccT OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yccT PE=3 SV=1 YCCT_ECO24 - UPF0319 protein YccT OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yccT PE=3 SV=1 gi\|83584614, gi\|... - gi\|83584614\|ref\|ZP_00923283.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... YCCT_ECOK1 - UPF0319 protein YccT OS=Escherichia coli O1:K1 / APEC GN=yccT PE=3 SV=1 gi\|13360508, gi\|... - gi\|15830302\|ref\|NP_309075.1\| hypothetical protein ECs1048 [Escherichia coli O157:H7 str. Sakai], gi\|... YCCT_ECOL5 - UPF0319 protein YccT OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yccT PE=3 SV=1 YCCT_ECOL6 - UPF0319 protein yccT OS=Escherichia coli O6 GN=yccT PE=3 SV=1 gi\|89107814, gi\|... - gi\|89107814\|ref\|AP_001594.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|406... YCCT_ECOUT - UPF0319 protein YccT OS=Escherichia coli (strain UTI89 / UPEC) GN=yccT PE=3 SV=1 sp\|B7UN43\|YCCT_ECO27 - UPF0319 protein yccT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yccT PE=3 SV=1	2.0E-71	[1..220]	[1..220]
YCCT_SHIF8 - UPF0319 protein YccT OS=Shigella flexneri serotype 5b (strain 8401) GN=yccT PE=3 SV=1	3.0E-71	[1..220]	[1..220]
YCCT_ECO55 - UPF0319 protein YccT OS=Escherichia coli (strain 55989 / EAEC) GN=yccT PE=3 SV=1 gi\|75513417, gi\|... - gi\|75513417\|ref\|ZP_00735821.1\| COG3110: Uncharacterized protein conserved in bacteria [Escherichia c... YCCT_ECOHS - UPF0319 protein YccT OS=Escherichia coli O9:H4 (strain HS) GN=yccT PE=3 SV=1 gi\|124529156, gi... - gi\|124529156\|ref\|ZP_01700266.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500111\|gb... YCCT_ECOLC - UPF0319 protein YccT OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yccT PE=3 SV=1	5.0E-71	[1..220]	[1..220]
gi\|83570628, gi\|... - gi\|83570628\|ref\|ZP_00922072.1\| COG3110: Uncharacterized protein conserved in bacteria [Shigella dyse...	9.0E-71	[1..220]	[1..220]
gi\|167419894, gi... - gi\|167419894\|ref\|ZP_02311647.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167048302, gi... - gi\|167402336\|ref\|ZP_02307804.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167467234 - gi\|167467234\|ref\|ZP_02331938.1\| hypothetical protein YpesF_04910 [Yersinia pestis FV-1] gi\|167057028, gi... - gi\|167424179\|ref\|ZP_02315932.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... Y1460_YERPS - UPF0319 protein YPTB1460 OS=Yersinia pseudotuberculosis GN=YPTB1460 PE=3 SV=1 gi\|149290957, gi... - gi\|149366583\|ref\|ZP_01888617.1\| putative exported protein [Yersinia pestis CA88-4125], gi\|149290957\|... Y1566_YERPB - UPF0319 protein YPTS_1566 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1566 PE=... Y1442_YERPE - UPF0319 protein YPO1442/y2728/YP_1333 OS=Yersinia pestis GN=YPO1442 PE=3 SV=1 Y1532_YERPP - UPF0319 protein YPDSF_1532 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1532 PE=3 SV=1 Y2623_YERPY - UPF0319 protein YPK_2623 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_2623 PE=3... gi\|165923595, gi... - gi\|165924535\|ref\|ZP_02220367.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166211350, gi... - gi\|166211350\|ref\|ZP_02237385.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166011956, gi... - gi\|166011956\|ref\|ZP_02232854.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229697783, gi... - gi\|229841417\|ref\|ZP_04461576.1\| putative exported protein [Yersinia pestis biovar Orientalis str. PE... gi\|229689135, gi... - gi\|229843527\|ref\|ZP_04463670.1\| putative exported protein [Yersinia pestis biovar Orientalis str. In... gi\|229703770, gi... - gi\|229894372\|ref\|ZP_04509555.1\| putative exported protein [Yersinia pestis Pestoides A], gi\|22970377... Y2534_YERP3 - UPF0319 protein YpsIP31758_2534 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... gi\|165911929, gi... - gi\|89103148\|ref\|ZP_01175739.1\| COG3110: Uncharacterized protein conserved in bacteria [Yersinia pest... Y734_YERPA - UPF0319 protein YPA_0734 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_0734 PE=3 SV=1 Y2537_YERPN - UPF0319 protein YPN_2537 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2537 PE=3 SV=1 gi\|45441160, gi\|... - gi\|45441160\|ref\|NP_992699.1\| hypothetical protein YP_1333 [Yersinia pestis biovar Microtus str. 9100... gi\|22126606, gi\|... - gi\|22126606\|ref\|NP_670029.1\| hypothetical protein y2728 [Yersinia pestis KIM], gi\|21959614\|gb\|AAM862... gi\|115347199, gi... - gi\|218928588\|ref\|YP_002346463.1\| hypothetical protein YPO1442 [Yersinia pestis CO92], gi\|16121720\|re... Y1460_YERPS - UPF0319 protein YPTB1460 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB1460 PE=3...	6.0E-65	[1..218]	[1..224]
Y3206_YERPG - UPF0319 protein YpAngola_A3206 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A3206 PE=3...	9.0E-65	[1..218]	[1..224]
Y395_PASMU - UPF0319 protein PM0395 OS=Pasteurella multocida (strain Pm70) GN=PM0395 PE=3 SV=1 Y395_PASMU - UPF0319 protein PM0395 OS=Pasteurella multocida GN=PM0395 PE=3 SV=1	2.0E-63	[1..217]	[1..217]
gi\|37201651, gi\|... - gi\|37677106\|ref\|NP_937502.1\| hypothetical protein VVA1446 [Vibrio vulnificus YJ016], gi\|37201651\|dbj...	5.0E-59	[4..216]	[23..233]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTGALATFL ALCLPVTVFA TTLRLSNEVD LLVLDGKKVS SSLLRGAESI ELENGPHQLV  60
   61 FRVEKTIRLP GNEERLYISP PLVISFDTQL ISQVNFQLPR LENEREASHF NAAPRLALLD 120
  121 GDAMPIPVKL DILA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.509	N/A	N/A	d.17.2	Copper amine oxidase, domains 1 and 2
View	Download	0.440	N/A	N/A	b.55.1	PH domain-like
View	Download	0.343	N/A	N/A	c.44.2	Enzyme IIB-cellobiose
View	Download	0.338	N/A	N/A	b.24.1	Hyaluronate lyase-like, C-terminal domain
View	Download	0.287	N/A	N/A	c.47.1	Thioredoxin-like

Predicted Domain #2

Region A:
Residues: [135-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITSTAKVVDY EIETERYNKS AKRASLPQFA TMMADDSTLL SDVSELDTVP PQSQTLTEQR  60
   61 LKYWFRLADP QTRHHFLQWA EKQPPS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.610	N/A	N/A	a.61.1	Retroviral matrix proteins
View	Download	0.578	N/A	N/A	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
View	Download	0.372	N/A	N/A	a.24.10	Histidine-containing phosphotransfer domain, HPT domain
View	Download	0.361	N/A	N/A	a.118.8	TPR-like
View	Download	0.344	N/A	N/A	a.118.1	ARM repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits