YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|190409373
Organism:	Saccharomyces cerevisiae RM11-1a
Length:	314 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|190409373.

Description	E-value	Query Range	Subject Range
MRS3 - Iron transporter that mediates Fe2+ transport across the inner mitochondrial membrane; mitochondrial... gi\|190409373 - gi\|190409373\|gb\|EDV12638.1\| carrier protein [Saccharomyces cerevisiae RM11-1a] MRS3_YEAST - Mitochondrial RNA-splicing protein MRS3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=... gi\|207344097 - gi\|207344097\|gb\|EDZ71347.1\| YJL133Wp-like protein [Saccharomyces cerevisiae AWRI1631]	1.0E-81	[9..314]	[9..314]
SLC25A31 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31 gi\|117645348 - gi\|117645348\|emb\|CAL38140.1\| hypothetical protein [synthetic construct] HGNC:25319\|MIM:6... - carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	3.0E-81	[29..312]	[16..309]
ADT3_BOVIN - ADP/ATP translocase 3 OS=Bos taurus GN=SLC25A6 PE=1 SV=3	4.0E-81	[27..311]	[2..298]
ADT1_MOUSE - ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 PE=1 SV=4	3.0E-80	[29..310]	[4..297]
ADT1_RAT - ADP/ATP translocase 1 OS=Rattus norvegicus GN=Slc25a4 PE=1 SV=3	6.0E-80	[29..310]	[4..297]
gi\|148224610, gi... - gi\|7542476\|gb\|AAF63471.1\|AF231347_1 adenine nucleotide translocase [Xenopus laevis], gi\|27882617\|gb\|...	6.0E-80	[31..311]	[6..298]

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Predicted Domain #1

Region A:
Residues: [1-314]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENSSSNNS TRPIPAIPMD LPDYEALPTH APLYHQLIAG AFAGIMEHSV MFPIDALKTR  60
   61 IQSANAKSLS AKNMLSQISH ISTSEGTLAL WKGVQSVILG AGPAHAVYFG TYEFCKKNLI 120
  121 DSSDTQTHHP FKTAISGACA TTASDALMNP FDTIKQRIQL NTSASVWQTT KQIYQSEGLA 180
  181 AFYYSYPTTL VMNIPFAAFN FVIYESSTKF LNPSNEYNPL IHCLCGSISG STCAAITTPL 240
  241 DCIKTVLQIR GSQTVSLEIM RKADTFSKAA SAIYQVYGWK GFWRGWKPRI VANMPATAIS 300
  301 WTAYECAKHF LMTY

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.42
Match:	1is2A
Description:	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4; Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits