YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|213850317
Organism:	Salmonella enterica subsp. enterica serovar Typhi str. M223
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|213850317.

Description	E-value	Query Range	Subject Range
gi\|205325725, gi... - gi\|205325725\|gb\|EDZ13564.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|238910152 - gi\|238910152\|ref\|ZP_04653989.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica ser... gi\|16422377, gi\|... - gi\|16767090\|ref\|NP_462705.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164223... gi\|62182296, gi\|... - gi\|62182296\|ref\|YP_218713.1\| hypothetical protein SC3726 [Salmonella enterica subsp. enterica serova... gi\|198245789, gi... - gi\|198245789\|ref\|YP_002217751.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica se... gi\|204321924, gi... - gi\|204928491\|ref\|ZP_03219690.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica ser... gi\|194736027, gi... - gi\|194736027\|ref\|YP_002116746.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica se... gi\|197215579, gi... - gi\|197251876\|ref\|YP_002148740.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=yidG] [protein=putative inner membrane protein] [protein_id=YP_005240068.1] [location=compleme... gi\|168818344, gi... - gi\|205344530\|gb\|EDZ31294.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|194471448, gi... - gi\|194471448\|ref\|ZP_03077432.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica ser... gi\|197291482, gi... - gi\|197291482\|gb\|EDY30834.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|205350420, gi... - gi\|205350420\|gb\|EDZ37051.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|167992389, gi... - gi\|205329400\|gb\|EDZ16164.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar... gi\|205332505, gi... - gi\|205332505\|gb\|EDZ19269.1\| inner membrane protein YidG [Salmonella enterica subsp. enterica serovar...	1.0E-51	[1..120]	[1..120]
gi\|56415686, gi\|... - gi\|56415686\|ref\|YP_152761.1\| hypothetical protein SPA3655 [Salmonella enterica subsp. enterica serov... gi\|197364613, gi... - gi\|197364613\|ref\|YP_002144250.1\| hypothetical protein SSPA3413 [Salmonella enterica subsp. enterica ...	2.0E-51	[1..120]	[1..120]
gi\|115515080, gi... - gi\|117625956\|ref\|YP_859279.1\| hypothetical protein APECO1_2777 [Escherichia coli APEC O1], gi\|115515... gi\|218367525, gi... - gi\|218560756\|ref\|YP_002393669.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|226902742, gi... - gi\|237703478\|ref\|ZP_04533959.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91213203, gi\|... - gi\|91213203\|ref\|YP_543189.1\| hypothetical protein UTI89_C4231 [Escherichia coli UTI89], gi\|91074777\|...	2.0E-48	[1..116]	[1..116]
YIDG_SHIFL - Inner membrane protein YidG OS=Shigella flexneri GN=yidG PE=3 SV=1 YIDG_ECOL6 - Inner membrane protein YidG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yidG P... gi\|24115010, gi\|... - gi\|24115010\|ref\|NP_709520.1\| hypothetical protein SF3787 [Shigella flexneri 2a str. 301], gi\|2405426... YIDG_ECO57 - Inner membrane protein YidG OS=Escherichia coli O157:H7 GN=yidG PE=3 SV=1 gi\|30043249, gi\|... - gi\|30064988\|ref\|NP_839159.1\| hypothetical protein S3982 [Shigella flexneri 2a str. 2457T], gi\|300432... gi\|12518514, gi\|... - gi\|15804275\|ref\|NP_290314.1\| hypothetical protein Z5170 [Escherichia coli O157:H7 EDL933], gi\|125185... EG11695 - inner membrane protein / Function unknown gi\|110617178, gi... - gi\|110807630\|ref\|YP_691150.1\| hypothetical protein SFV_3835 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|124529025, gi... - gi\|124529025\|ref\|ZP_01700171.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500164\|gb... YIDG_ECOL6 - Inner membrane protein yidG OS=Escherichia coli O6 GN=yidG PE=3 SV=1 gi\|188492552, gi... - gi\|75514259\|ref\|ZP_00736567.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ... gi\|73857472, gi\|... - gi\|74313995\|ref\|YP_312414.1\| hypothetical protein SSON_3629 [Shigella sonnei Ss046], gi\|73857472\|gb\|... gi\|193069154, gi... - gi\|75236399\|ref\|ZP_00720495.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ... gi\|75258216, gi\|... - gi\|75258216\|ref\|ZP_00729664.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ... gi\|254595084, gi... - gi\|254795684\|ref\|YP_003080521.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|253975529, gi... - gi\|254163628\|ref\|YP_003046736.1\| predicted inner membrane protein [Escherichia coli B str. REL606], ... gi\|226838861, gi... - gi\|254038896\|ref\|ZP_04872948.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22683886... gi\|82546051, gi\|... - gi\|82546051\|ref\|YP_409998.1\| hypothetical protein SBO_3694 [Shigella boydii Sb227], gi\|81247462\|gb\|A... gi\|254290378, gi... - gi\|254290378\|ref\|YP_003056126.1\| predicted inner membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|89110337, gi\|... - gi\|89110337\|ref\|AP_004117.1\| predicted inner membrane protein [Escherichia coli str. K-12 substr. W3... gi\|242379215, gi... - gi\|251786942\|ref\|YP_003001246.1\| hypothetical protein B21_03502 [Escherichia coli BL21], gi\|24237921... gi\|238902768, gi... - gi\|238902768\|ref\|YP_002928564.1\| putative inner membrane protein [Escherichia coli BW2952], gi\|23886... gi\|75177748, gi\|... - gi\|75177748\|ref\|ZP_00697813.1\| COG0477: Permeases of the major facilitator superfamily [Shigella boy... gi\|227839177, gi... - gi\|227883899\|ref\|ZP_04001704.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783917... gi\|75210712, gi\|... - gi\|75210712\|ref\|ZP_00710853.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ... gi\|75231056, gi\|... - gi\|75231056\|ref\|ZP_00717491.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ... gi\|157155834, gi... - gi\|75188433\|ref\|ZP_00701700.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ... gi\|75197577, gi\|... - gi\|75197577\|ref\|ZP_00707647.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ... gi\|83571470, gi\|... - gi\|83571470\|ref\|ZP_00922910.1\| COG0477: Permeases of the major facilitator superfamily [Shigella dys... gi\|15833870, gi\|... - gi\|15833870\|ref\|NP_312643.1\| hypothetical protein ECs4616 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168772287, gi... - gi\|187771701\|gb\|EDU35545.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168779900, gi... - gi\|189002584\|gb\|EDU71570.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|189374473, gi... - gi\|189374473\|gb\|EDU92889.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168798713, gi... - gi\|189378737\|gb\|EDU97153.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|170018085, gi... - gi\|170018085\|ref\|YP_001723039.1\| hypothetical protein EcolC_0025 [Escherichia coli ATCC 8739], gi\|16... gi\|170083182, gi... - gi\|170083182\|ref\|YP_001732502.1\| inner membrane protein [Escherichia coli str. K-12 substr. DH10B], ... gi\|170519255, gi... - gi\|170681537\|ref\|YP_001746004.1\| hypothetical protein EcSMS35_4041 [Escherichia coli SMS-3-5], gi\|17... gi\|195936300 - gi\|195936300\|ref\|ZP_03081682.1\| inner membrane protein [Escherichia coli O157:H7 str. EC4024] YIDG_ECOLI - Inner membrane protein yidG - Escherichia coli gi\|188016872, gi... - gi\|188016872\|gb\|EDU54994.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... EG11695 - inner membrane protein / Function unknown gi\|189359334, gi... - gi\|189359334\|gb\|EDU77753.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|189369624, gi... - gi\|189369624\|gb\|EDU88040.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189364366, gi... - gi\|189364366\|gb\|EDU82785.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|218354131, gi... - gi\|218697399\|ref\|YP_002405066.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218372510, gi... - gi\|218702524\|ref\|YP_002410153.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|218707322, gi... - gi\|218707322\|ref\|YP_002414841.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|208808954, gi... - gi\|208808954\|ref\|ZP_03251291.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208814088, gi... - gi\|208814088\|ref\|ZP_03255417.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208738601, gi... - gi\|208818478\|ref\|ZP_03258798.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209162164, gi... - gi\|209400764\|ref\|YP_002273205.1\| hypothetical protein ECH74115_5107 [Escherichia coli O157:H7 str. E... gi\|209921152, gi... - gi\|209921152\|ref\|YP_002295236.1\| hypothetical protein ECSE_3961 [Escherichia coli SE11], gi\|20991441... gi\|215267092, gi... - gi\|215489020\|ref\|YP_002331451.1\| predicted inner membrane protein [Escherichia coli O127:H6 str. E23... gi\|217326410, gi... - gi\|217326410\|ref\|ZP_03442494.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|218363011, gi... - gi\|218556242\|ref\|YP_002389156.1\| conserved hypothetical protein; putative inner membrane protein [Es...	3.0E-48	[1..116]	[1..116]
gi\|194425123, gi... - gi\|83588458\|ref\|ZP_00927082.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ...	7.0E-48	[1..116]	[1..116]
gi\|82779210, gi\|... - gi\|82779210\|ref\|YP_405559.1\| hypothetical protein SDY_4159 [Shigella dysenteriae Sd197], gi\|81243358...	8.0E-48	[1..116]	[1..116]
gi\|110644023, gi... - gi\|110644023\|ref\|YP_671753.1\| hypothetical protein ECP_3881 [Escherichia coli 536], gi\|110345615\|gb\|... gi\|218691968, gi... - gi\|218691968\|ref\|YP_002400180.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|75242530, gi\|... - gi\|75242530\|ref\|ZP_00726274.1\| COG0477: Permeases of the major facilitator superfamily [Escherichia ...	1.0E-47	[1..116]	[1..116]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSRKARRQ NDPGLQPERT SLAWFRTLLG YGALMALAVR HYWHQAGFLF WVSISVLAIV  60
   61 AVILWRYTLS RNLMDVAHSD FSETHVMRDK FLISLAVLSL AILFAVTHIR QLIAFIGDFI 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits